1 HAMP#1
56-126 aa · 71 aa · 20.0% of protein
Raw token
HAMP:56:1.6e-18:126:71:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
EMO91_RS04230
Histidine kinase, Classic
Bifidobacterium myosotis · GCF_008698155
ClassHKTypeClassicLength355 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_008698155#EMO91_RS04230Stable P2CS identifier used across views.
GenomeGCF_008698155Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length355 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage247 / 355 aa (69.6%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa355 aa
Domain-by-domain annotation3 items
2 HisKA#2
130-194 aa · 65 aa · 18.3% of protein
Raw token
HisKA:130:9.23e-16:194:65:643 HATPase_c#3
239-349 aa · 111 aa · 31.3% of protein
Raw token
HATPase_c:239:7e-22:349:112:109- Raw architecture: HAMP:56:1.6e-18:126:71:69#HisKA:130:9.23e-16:194:65:64#HATPase_c:239:7e-22:349:112:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_008698155::NZ_RZUH01000002.1::G00017
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span522638-524513Genomic interval covered by the local TCS group.
Identifiers
Old locus tagEMO91_04240RefSeq proteinWP_094667639.1
Context group ID
GCF_008698155::NZ_RZUH01000002.1::G00017Context members
EMO91_RS04230EMO91_RS04235
Partner locus tags
EMO91_RS04230EMO91_RS04235
Partner old locus tags
EMO91_04240EMO91_04245
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_094667639.1Primary protein accession used for annex mappings.
UniProt accessionA0A261FKC7Primary UniProt accession resolved in the annex database.
UniProt IDA0A261FKC7_9BIFIDisplay identifier provided by UniProt.
GO / PubMed3 / 2Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagEMO91_RS04230Primary locus identifier stored in the genes table.
Old locus tagEMO91_04240Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_RZUH01000002.1Sequence record reported by the local genomic context database.
Genomic interval522 638-523 705 nt1 068 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span522 638-524 513 ntGCF_008698155::NZ_RZUH01000002.1::G00017
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_008698155::NZ_RZUH01000002.1::G00017Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_RZUH01000002.1All displayed genes belong to this local TCS context.
Neighborhood span522 638-524 513 nt1 876 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
522 638 nt524 513 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
EMO91_RS04230GCF_008698155#EMO91_RS04230
HKClassicCurrent focus
522 638-523 705 nt · Reverse (-)
EMO91_RS04235GCF_008698155#EMO91_RS04235
RROmpR
523 791-524 513 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002259745#BMYO_RS06235Use this link to inspect the representative gene detail.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2775838
Simplified PFAM architecture for HKOC_2775838
PFAM domain coverage: 230 / 355 aa (64.8%)
1 aa355 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[73-125] | HisKA[130-194] | HATPase_c[239-350]
- Domain count: 3
- Matched identifier: HKOC_2775838
- Positioned domains: HAMP 73-125 ; HisKA 130-194 ; HATPase_c 239-350
Cluster members and taxonomy
Representative gene: GCF_002259745#BMYO_RS06235
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 630 166 · GCF_008698155
AssemblyASM869815v1 · Scaffoldhaploid
Genome composition3 275 217 bp · 63,0% GCBifidobacterium myosotis
Signal transduction countsGenes 48 · HK 18 · RR 26CheA 0 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key