1 HAMP#1
219-288 aa · 70 aa · 12.1% of protein
Raw token
HAMP:219:8.51e-17:288:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
EMO91_RS03670
Histidine kinase, Classic
Bifidobacterium myosotis · GCF_008698155
ClassHKTypeClassicLength577 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_008698155#EMO91_RS03670Stable P2CS identifier used across views.
GenomeGCF_008698155Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length577 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage249 / 577 aa (43.2%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa577 aa
Domain-by-domain annotation3 items
2 HisKA#2
299-366 aa · 68 aa · 11.8% of protein
Raw token
HisKA:299:0.0000000000000109:366:68:643 HATPase_c#3
413-523 aa · 111 aa · 19.2% of protein
Raw token
HATPase_c:413:5.29e-29:523:111:109- Raw architecture: HAMP:219:8.51e-17:288:70:69#HisKA:299:0.0000000000000109:366:68:64#HATPase_c:413:5.29e-29:523:111:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_008698155::NZ_RZUH01000002.1::G00015
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span380094-382552Genomic interval covered by the local TCS group.
Identifiers
Old locus tagEMO91_03680RefSeq proteinWP_150378862.1
Context group ID
GCF_008698155::NZ_RZUH01000002.1::G00015Context members
EMO91_RS03665EMO91_RS03670
Partner locus tags
EMO91_RS03665EMO91_RS03670
Partner old locus tags
EMO91_03675EMO91_03680
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_150378862.1Primary protein accession used for annex mappings.
UniProt accessionA0A5M9ZN61Primary UniProt accession resolved in the annex database.
UniProt IDA0A5M9ZN61_9BIFIDisplay identifier provided by UniProt.
GO / PubMed3 / 1Unique GO terms and literature references available below.
Reference hubs
GO terms
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagEMO91_RS03670Primary locus identifier stored in the genes table.
Old locus tagEMO91_03680Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_RZUH01000002.1Sequence record reported by the local genomic context database.
Genomic interval380 819-382 552 nt1 734 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span380 094-382 552 ntGCF_008698155::NZ_RZUH01000002.1::G00015
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_008698155::NZ_RZUH01000002.1::G00015Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_RZUH01000002.1All displayed genes belong to this local TCS context.
Neighborhood span380 094-382 552 nt2 459 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
380 094 nt382 552 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
EMO91_RS03665GCF_008698155#EMO91_RS03665
RROmpR
380 094-380 819 nt · Forward (+)
EMO91_RS03670GCF_008698155#EMO91_RS03670
HKClassicCurrent focus
380 819-382 552 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_008698155#EMO91_RS03670The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1178932
Simplified PFAM architecture for HKOC_1178932
PFAM domain coverage: 230 / 577 aa (39.9%)
1 aa577 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[236-288] | HisKA[300-366] | HATPase_c[413-522]
- Domain count: 3
- Matched identifier: HKOC_1178932
- Positioned domains: HAMP 236-288 ; HisKA 300-366 ; HATPase_c 413-522
Cluster members and taxonomy
Representative gene: GCF_008698155#EMO91_RS03670
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 630 166 · GCF_008698155
AssemblyASM869815v1 · Scaffoldhaploid
Genome composition3 275 217 bp · 63,0% GCBifidobacterium myosotis
Signal transduction countsGenes 48 · HK 18 · RR 26CheA 0 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key