1 Response_reg#1
4-113 aa · 110 aa · 45.6% of protein
Raw token
Response_reg:4:7.81e-38:113:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
EMO91_RS03665
Response regulator OmpR family
Bifidobacterium myosotis · GCF_008698155
ClassRRTypeOmpRLength241 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_008698155#EMO91_RS03665Stable P2CS identifier used across views.
GenomeGCF_008698155Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length241 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage187 / 241 aa (77.6%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa241 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
160-236 aa · 77 aa · 32.0% of protein
Raw token
Trans_reg_C:160:1.59e-33:236:77:77- Raw architecture: Response_reg:4:7.81e-38:113:111:111#Trans_reg_C:160:1.59e-33:236:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_008698155::NZ_RZUH01000002.1::G00015
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span380094-382552Genomic interval covered by the local TCS group.
Identifiers
Old locus tagEMO91_03675RefSeq proteinWP_150378861.1
Context group ID
GCF_008698155::NZ_RZUH01000002.1::G00015Context members
EMO91_RS03665EMO91_RS03670
Partner locus tags
EMO91_RS03665EMO91_RS03670
Partner old locus tags
EMO91_03675EMO91_03680
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_150378861.1Primary protein accession used for annex mappings.
UniProt accessionA0A5M9ZN74Primary UniProt accession resolved in the annex database.
UniProt IDA0A5M9ZN74_9BIFIDisplay identifier provided by UniProt.
GO / PubMed5 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagEMO91_RS03665Primary locus identifier stored in the genes table.
Old locus tagEMO91_03675Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_RZUH01000002.1Sequence record reported by the local genomic context database.
Genomic interval380 094-380 819 nt726 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span380 094-382 552 ntGCF_008698155::NZ_RZUH01000002.1::G00015
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_008698155::NZ_RZUH01000002.1::G00015Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_RZUH01000002.1All displayed genes belong to this local TCS context.
Neighborhood span380 094-382 552 nt2 459 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
380 094 nt382 552 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
EMO91_RS03665GCF_008698155#EMO91_RS03665
RROmpRCurrent focus
380 094-380 819 nt · Forward (+)
EMO91_RS03670GCF_008698155#EMO91_RS03670
HKClassic
380 819-382 552 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_008698155#EMO91_RS03665The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0869288
Simplified PFAM architecture for RROC_0869288
PFAM domain coverage: 187 / 241 aa (77.6%)
1 aa241 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-113] | Trans_reg_C[160-236]
- Domain count: 2
- Matched identifier: RROC_0869288
- Positioned domains: Response_reg 4-113 ; Response_reg 4-113 ; Trans_reg_C 160-236 ; Trans_reg_C 160-236
Cluster members and taxonomy
Representative gene: GCF_008698155#EMO91_RS03665
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 630 166 · GCF_008698155
AssemblyASM869815v1 · Scaffoldhaploid
Genome composition3 275 217 bp · 63,0% GCBifidobacterium myosotis
Signal transduction countsGenes 48 · HK 18 · RR 26CheA 0 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key