1 Response_reg#1
4-108 aa · 105 aa · 43.6% of protein
Raw token
Response_reg:4:3.68e-23:108:108:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
EMO91_RS03420
Response regulator LytTR family
Bifidobacterium myosotis · GCF_008698155
ClassRRTypeLytTRLength241 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_008698155#EMO91_RS03420Stable P2CS identifier used across views.
GenomeGCF_008698155Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length241 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage197 / 241 aa (81.7%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa241 aa
Domain-by-domain annotation2 items
2 LytTR#2
141-232 aa · 92 aa · 38.2% of protein
Raw token
LytTR:141:8.28e-21:232:97:98- Raw architecture: Response_reg:4:3.68e-23:108:108:111#LytTR:141:8.28e-21:232:97:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_008698155::NZ_RZUH01000002.1::G00013
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span312524-313249Genomic interval covered by the local TCS group.
Identifiers
Old locus tagEMO91_03430RefSeq proteinWP_150378830.1
Context group ID
GCF_008698155::NZ_RZUH01000002.1::G00013Context members
EMO91_RS03420
Partner locus tags
EMO91_RS03420
Partner old locus tags
EMO91_03430
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_150378830.1Primary protein accession used for annex mappings.
UniProt accessionA0A5M9ZN22Primary UniProt accession resolved in the annex database.
UniProt IDA0A5M9ZN22_9BIFIDisplay identifier provided by UniProt.
GO / PubMed2 / 1Unique GO terms and literature references available below.
Reference hubs
GO terms
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagEMO91_RS03420Primary locus identifier stored in the genes table.
Old locus tagEMO91_03430Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_RZUH01000002.1Sequence record reported by the local genomic context database.
Genomic interval312 524-313 249 nt726 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span312 524-313 249 ntGCF_008698155::NZ_RZUH01000002.1::G00013
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_008698155::NZ_RZUH01000002.1::G00013Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_RZUH01000002.1All displayed genes belong to this local TCS context.
Neighborhood span312 524-313 249 nt726 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
312 524 nt313 249 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
EMO91_RS03420GCF_008698155#EMO91_RS03420
RRLytTRCurrent focus
312 524-313 249 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_008698155#EMO91_RS03420The current gene is the representative for this cluster.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0869287
Simplified PFAM architecture for RROC_0869287
PFAM domain coverage: 196 / 241 aa (81.3%)
1 aa241 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[4-109] | LytTR[142-231]
- Domain count: 2
- Matched identifier: RROC_0869287
- Positioned domains: Response_reg 4-109 ; Response_reg 4-109 ; LytTR 142-231 ; LytTR 142-231
Cluster members and taxonomy
Representative gene: GCF_008698155#EMO91_RS03420
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 630 166 · GCF_008698155
AssemblyASM869815v1 · Scaffoldhaploid
Genome composition3 275 217 bp · 63,0% GCBifidobacterium myosotis
Signal transduction countsGenes 48 · HK 18 · RR 26CheA 0 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key