1 HisKA#1
78-122 aa · 45 aa · 15.8% of protein
Raw token
HisKA:78:0.0000363:122:54:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CCC20_RS11375
Histidine kinase, Classic
Streptococcus sp. LMAG:39 · GCF_008680485
ClassHKTypeClassicLength284 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_008680485#CCC20_RS11375Stable P2CS identifier used across views.
GenomeGCF_008680485Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Streptococcaceae; Streptococcus
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length284 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage154 / 284 aa (54.2%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa284 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
167-275 aa · 109 aa · 38.4% of protein
Raw token
HATPase_c:167:1.1e-22:275:109:109- Raw architecture: HisKA:78:0.0000363:122:54:64#HATPase_c:167:1.1e-22:275:109:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_008680485::NZ_NALE01000001.1::G00019
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span2217509-2218365Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_008680485::NZ_NALE01000001.1::G00019Context members
CCC20_RS11375
Partner locus tags
CCC20_RS11375
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_287180412.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCCC20_RS11375Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_NALE01000001.1Sequence record reported by the local genomic context database.
Genomic interval2 217 509-2 218 365 nt857 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span2 217 509-2 218 365 ntGCF_008680485::NZ_NALE01000001.1::G00019
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_008680485::NZ_NALE01000001.1::G00019Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_NALE01000001.1All displayed genes belong to this local TCS context.
Neighborhood span2 217 509-2 218 365 nt857 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
2 217 509 nt2 218 365 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
CCC20_RS11375GCF_008680485#CCC20_RS11375
HKClassicCurrent focus
2 217 509-2 218 365 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_008680485#CCC20_RS11375The current gene is the representative for this cluster.
PFAM architectureHATPase_c1 domain in the representative PFAM annotation.
PFAM architecture for HKOC_2900107
Simplified PFAM architecture for HKOC_2900107
PFAM domain coverage: 109 / 284 aa (38.4%)
1 aa284 aa
HATPase_c
- Simplified architecture: HATPase_c
- Raw architecture: HATPase_c[168-276]
- Domain count: 1
- Matched identifier: HKOC_2900107
- Positioned domains: HATPase_c 168-276
Cluster members and taxonomy
Representative gene: GCF_008680485#CCC20_RS11375
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 969 535 · GCF_008680485
AssemblyASM868048v1 · Contighaploid
Genome composition2 218 365 bp · 38,0% GCStreptococcus sp. LMAG:39
Signal transduction countsGenes 33 · HK 16 · RR 16CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderLactobacillalesFamilyStreptococcaceaeGenusStreptococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Lactobacillales6Streptococcaceae7Streptococcus
Related genes
Preview from the same derived genome key