1 HisKA#1
299-361 aa · 63 aa · 12.4% of protein
Raw token
HisKA:299:5.11e-17:361:63:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CCC20_RS02640
Histidine kinase, Classic
Streptococcus sp. LMAG:39 · GCF_008680485
ClassHKTypeClassicLength510 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_008680485#CCC20_RS02640Stable P2CS identifier used across views.
GenomeGCF_008680485Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Streptococcaceae; Streptococcus
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length510 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage166 / 510 aa (32.5%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa510 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
408-510 aa · 103 aa · 20.2% of protein
Raw token
HATPase_c:408:3.65e-26:510:108:109- Raw architecture: HisKA:299:5.11e-17:361:63:64#HATPase_c:408:3.65e-26:510:108:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_008680485::NZ_NALE01000001.1::G00005
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span559789-561958Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_008680485::NZ_NALE01000001.1::G00005Context members
CCC20_RS02640CCC20_RS02645
Partner locus tags
CCC20_RS02640CCC20_RS02645
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_013852115.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCCC20_RS02640Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_NALE01000001.1Sequence record reported by the local genomic context database.
Genomic interval559 789-561 321 nt1 533 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span559 789-561 958 ntGCF_008680485::NZ_NALE01000001.1::G00005
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_008680485::NZ_NALE01000001.1::G00005Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_NALE01000001.1All displayed genes belong to this local TCS context.
Neighborhood span559 789-561 958 nt2 170 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
559 789 nt561 958 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
CCC20_RS02640GCF_008680485#CCC20_RS02640
HKClassicCurrent focus
559 789-561 321 nt · Reverse (-)
CCC20_RS02645GCF_008680485#CCC20_RS02645
RROmpR
561 266-561 958 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003433675#DW244_RS02685Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1429150
Simplified PFAM architecture for HKOC_1429150
PFAM domain coverage: 163 / 510 aa (32.0%)
1 aa510 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[300-361] | HATPase_c[409-509]
- Domain count: 2
- Matched identifier: HKOC_1429150
- Positioned domains: HisKA 300-361 ; HATPase_c 409-509
Cluster members and taxonomy
Representative gene: GCF_003433675#DW244_RS02685
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 969 535 · GCF_008680485
AssemblyASM868048v1 · Contighaploid
Genome composition2 218 365 bp · 38,0% GCStreptococcus sp. LMAG:39
Signal transduction countsGenes 33 · HK 16 · RR 16CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderLactobacillalesFamilyStreptococcaceaeGenusStreptococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Lactobacillales6Streptococcaceae7Streptococcus
Related genes
Preview from the same derived genome key