1 HAMP#1
144-211 aa · 68 aa · 15.5% of protein
Raw token
HAMP:144:0.00000000000616:211:68:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CCC20_RS09530
Histidine kinase, Classic
Streptococcus sp. LMAG:39 · GCF_008680485
ClassHKTypeClassicLength440 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_008680485#CCC20_RS09530Stable P2CS identifier used across views.
GenomeGCF_008680485Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Streptococcaceae; Streptococcus
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length440 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage228 / 440 aa (51.8%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa440 aa
Domain-by-domain annotation3 items
2 HisKA#2
231-296 aa · 66 aa · 15.0% of protein
Raw token
HisKA:231:0.000000182:296:66:643 HATPase_c#3
344-437 aa · 94 aa · 21.4% of protein
Raw token
HATPase_c:344:0.000000000000444:437:101:109- Raw architecture: HAMP:144:0.00000000000616:211:68:69#HisKA:231:0.000000182:296:66:64#HATPase_c:344:0.000000000000444:437:101:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_008680485::NZ_NALE01000001.1::G00015
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span1846614-1848589Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_008680485::NZ_NALE01000001.1::G00015Context members
CCC20_RS09525CCC20_RS09530
Partner locus tags
CCC20_RS09525CCC20_RS09530
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_270620172.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCCC20_RS09530Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_NALE01000001.1Sequence record reported by the local genomic context database.
Genomic interval1 847 267-1 848 589 nt1 323 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span1 846 614-1 848 589 ntGCF_008680485::NZ_NALE01000001.1::G00015
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_008680485::NZ_NALE01000001.1::G00015Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_NALE01000001.1All displayed genes belong to this local TCS context.
Neighborhood span1 846 614-1 848 589 nt1 976 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 846 614 nt1 848 589 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
CCC20_RS09525GCF_008680485#CCC20_RS09525
RROmpR
1 846 614-1 847 270 nt · Forward (+)
CCC20_RS09530GCF_008680485#CCC20_RS09530
HKClassicCurrent focus
1 847 267-1 848 589 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_008680485#CCC20_RS09530The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2075034
Simplified PFAM architecture for HKOC_2075034
PFAM domain coverage: 199 / 440 aa (45.2%)
1 aa440 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[162-212] | HisKA[232-295] | HATPase_c[343-426]
- Domain count: 3
- Matched identifier: HKOC_2075034
- Positioned domains: HAMP 162-212 ; HisKA 232-295 ; HATPase_c 343-426
Cluster members and taxonomy
Representative gene: GCF_008680485#CCC20_RS09530
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 969 535 · GCF_008680485
AssemblyASM868048v1 · Contighaploid
Genome composition2 218 365 bp · 38,0% GCStreptococcus sp. LMAG:39
Signal transduction countsGenes 33 · HK 16 · RR 16CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderLactobacillalesFamilyStreptococcaceaeGenusStreptococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Lactobacillales6Streptococcaceae7Streptococcus
Related genes
Preview from the same derived genome key