1 HAMP#1
159-233 aa · 75 aa · 15.9% of protein
Raw token
HAMP:159:0.0000000506:233:75:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CCC20_RS03810
Histidine kinase, Classic
Streptococcus sp. LMAG:39 · GCF_008680485
ClassHKTypeClassicLength471 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_008680485#CCC20_RS03810Stable P2CS identifier used across views.
GenomeGCF_008680485Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Streptococcaceae; Streptococcus
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length471 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage249 / 471 aa (52.9%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa471 aa
Domain-by-domain annotation3 items
2 HisKA#2
238-303 aa · 66 aa · 14.0% of protein
Raw token
HisKA:238:2.11e-16:303:66:643 HATPase_c#3
354-461 aa · 108 aa · 22.9% of protein
Raw token
HATPase_c:354:3.42e-25:461:108:109- Raw architecture: HAMP:159:0.0000000506:233:75:69#HisKA:238:2.11e-16:303:66:64#HATPase_c:354:3.42e-25:461:108:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_008680485::NZ_NALE01000001.1::G00006
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span782651-784827Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_008680485::NZ_NALE01000001.1::G00006Context members
CCC20_RS03810CCC20_RS03815
Partner locus tags
CCC20_RS03810CCC20_RS03815
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_231557397.1Primary protein accession used for annex mappings.
UniProt accessionA0AAW6YJG7Primary UniProt accession resolved in the annex database.
UniProt IDA0AAW6YJG7_9STREDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCCC20_RS03810Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_NALE01000001.1Sequence record reported by the local genomic context database.
Genomic interval782 651-784 066 nt1 416 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span782 651-784 827 ntGCF_008680485::NZ_NALE01000001.1::G00006
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_008680485::NZ_NALE01000001.1::G00006Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_NALE01000001.1All displayed genes belong to this local TCS context.
Neighborhood span782 651-784 827 nt2 177 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
782 651 nt784 827 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
CCC20_RS03810GCF_008680485#CCC20_RS03810
HKClassicCurrent focus
782 651-784 066 nt · Reverse (-)
CCC20_RS03815GCF_008680485#CCC20_RS03815
RROmpR
784 135-784 827 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000146405#HMPREF9319_RS07840Use this link to inspect the representative gene detail.
PFAM architectureArlS_N + HAMP + HisKA + HATPase_c4 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1707089
Simplified PFAM architecture for HKOC_1707089
PFAM domain coverage: 368 / 471 aa (78.1%)
1 aa471 aa
ArlS_NHAMPHisKAHATPase_c
- Simplified architecture: ArlS_N + HAMP + HisKA + HATPase_c
- Raw architecture: ArlS_N[14-156] | HAMP[183-233] | HisKA[239-303] | HATPase_c[353-461]
- Domain count: 4
- Matched identifier: HKOC_1707089
- Positioned domains: ArlS_N 14-156 ; HAMP 183-233 ; HisKA 239-303 ; HATPase_c 353-461
Cluster members and taxonomy
Representative gene: GCF_000146405#HMPREF9319_RS07840
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 969 535 · GCF_008680485
AssemblyASM868048v1 · Contighaploid
Genome composition2 218 365 bp · 38,0% GCStreptococcus sp. LMAG:39
Signal transduction countsGenes 33 · HK 16 · RR 16CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderLactobacillalesFamilyStreptococcaceaeGenusStreptococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Lactobacillales6Streptococcaceae7Streptococcus
Related genes
Preview from the same derived genome key