1 PAS#1
94-198 aa · 105 aa · 23.3% of protein
Raw token
PAS:94:0.000000378:198:114:113P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CCC20_RS02600
Histidine kinase, Classic
Streptococcus sp. LMAG:39 · GCF_008680485
ClassHKTypeClassicLength450 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_008680485#CCC20_RS02600Stable P2CS identifier used across views.
GenomeGCF_008680485Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Streptococcaceae; Streptococcus
Domain signature
Compact overview inferred from the domain field
PASHisKAHATPase_c
Protein length450 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage284 / 450 aa (63.1%)Merged over positioned domains only.
Domain description1 PAS,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa450 aa
Domain-by-domain annotation3 items
2 HisKA#2
208-274 aa · 67 aa · 14.9% of protein
Raw token
HisKA:208:1.53e-16:274:67:643 HATPase_c#3
326-437 aa · 112 aa · 24.9% of protein
Raw token
HATPase_c:326:1.13e-34:437:112:109- Raw architecture: PAS:94:0.000000378:198:114:113#HisKA:208:1.53e-16:274:67:64#HATPase_c:326:1.13e-34:437:112:109
- Domain description: 1 PAS,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_008680485::NZ_NALE01000001.1::G00004
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span552968-555023Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_008680485::NZ_NALE01000001.1::G00004Context members
CCC20_RS02600CCC20_RS02605
Partner locus tags
CCC20_RS02600CCC20_RS02605
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_013852111.1Primary protein accession used for annex mappings.
UniProt accessionA0A2I1YFJ1Primary UniProt accession resolved in the annex database.
UniProt IDA0A2I1YFJ1_STRMCDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCCC20_RS02600Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_NALE01000001.1Sequence record reported by the local genomic context database.
Genomic interval552 968-554 320 nt1 353 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span552 968-555 023 ntGCF_008680485::NZ_NALE01000001.1::G00004
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_008680485::NZ_NALE01000001.1::G00004Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_NALE01000001.1All displayed genes belong to this local TCS context.
Neighborhood span552 968-555 023 nt2 056 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
552 968 nt555 023 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
CCC20_RS02600GCF_008680485#CCC20_RS02600
HKClassicCurrent focus
552 968-554 320 nt · Reverse (-)
CCC20_RS02605GCF_008680485#CCC20_RS02605
RROmpR
554 313-555 023 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000270165#SGPB_RS07440Use this link to inspect the representative gene detail.
PFAM architectureCovS-like_HAMP + PAS + HisKA + HATPase_c4 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1962326
Simplified PFAM architecture for HKOC_1962326
PFAM domain coverage: 326 / 450 aa (72.4%)
1 aa450 aa
CovS-like_HAMPPASHisKAHATPase_c
- Simplified architecture: CovS-like_HAMP + PAS + HisKA + HATPase_c
- Raw architecture: CovS-like_HAMP[32-86] | PAS[95-189] | HisKA[209-273] | HATPase_c[326-436]
- Domain count: 4
- Matched identifier: HKOC_1962326
- Positioned domains: CovS-like_HAMP 32-86 ; PAS 95-189 ; HisKA 209-273 ; HATPase_c 326-436
Cluster members and taxonomy
Representative gene: GCF_000270165#SGPB_RS07440
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 969 535 · GCF_008680485
AssemblyASM868048v1 · Contighaploid
Genome composition2 218 365 bp · 38,0% GCStreptococcus sp. LMAG:39
Signal transduction countsGenes 33 · HK 16 · RR 16CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderLactobacillalesFamilyStreptococcaceaeGenusStreptococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Lactobacillales6Streptococcaceae7Streptococcus
Related genes
Preview from the same derived genome key