1 dCache_1#1
162-270 aa · 109 aa · 12.9% of protein
Raw token
dCache_1:162:0.00000126:270:109:195P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
F2P57_RS06800
Histidine kinase, Hybrid
[Clostridium] symbiosum · GCF_008632235
ClassHKTypeHybridLength843 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_008632235#F2P57_RS06800Stable P2CS identifier used across views.
GenomeGCF_008632235Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Lachnoclostridium
Domain signature
Compact overview inferred from the domain field
dCache_1HisKAHATPase_cResponse_reg
Protein length843 aaLength used to scale native and Biotite-like views.
Annotated domains55 with usable coordinates.
Domain coverage513 / 843 aa (60.9%)Merged over positioned domains only.
Domain description1 dCache_1,1 HisKA,1 HATPase_c,2 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa843 aa
Domain-by-domain annotation5 items
2 HisKA#2
332-398 aa · 67 aa · 7.9% of protein
Raw token
HisKA:332:5.33e-18:398:67:643 HATPase_c#3
446-561 aa · 116 aa · 13.8% of protein
Raw token
HATPase_c:446:9.75e-30:561:117:1094 Response_reg#4
579-685 aa · 107 aa · 12.7% of protein
Raw token
Response_reg:579:2.41e-22:685:107:1115 Response_reg#5
720-833 aa · 114 aa · 13.5% of protein
Raw token
Response_reg:720:1e-22:833:114:111- Raw architecture: dCache_1:162:0.00000126:270:109:195#HisKA:332:5.33e-18:398:67:64#HATPase_c:446:9.75e-30:561:117:109#Response_reg:579:2.41e-22:685:107:111#Response_reg:720:1e-22:833:114:111
- Domain description: 1 dCache_1,1 HisKA,1 HATPase_c,2 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_008632235::NZ_VWSY01000001.1::G00028
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span1452521-1455052Genomic interval covered by the local TCS group.
Identifiers
Old locus tagF2P57_06800RefSeq proteinWP_243133692.1
Context group ID
GCF_008632235::NZ_VWSY01000001.1::G00028Context members
F2P57_RS06800
Partner locus tags
F2P57_RS06800
Partner old locus tags
F2P57_06800
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_243133692.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagF2P57_RS06800Primary locus identifier stored in the genes table.
Old locus tagF2P57_06800Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_VWSY01000001.1Sequence record reported by the local genomic context database.
Genomic interval1 452 521-1 455 052 nt2 532 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span1 452 521-1 455 052 ntGCF_008632235::NZ_VWSY01000001.1::G00028
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_008632235::NZ_VWSY01000001.1::G00028Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_VWSY01000001.1All displayed genes belong to this local TCS context.
Neighborhood span1 452 521-1 455 052 nt2 532 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 452 521 nt1 455 052 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
F2P57_RS06800GCF_008632235#F2P57_RS06800
HKHybridCurrent focus
1 452 521-1 455 052 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_008632235#F2P57_RS06800The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c + Response_reg + Response_reg4 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0504112
Simplified PFAM architecture for HKOC_0504112
PFAM domain coverage: 414 / 843 aa (49.1%)
1 aa843 aa
HisKAHATPase_cResponse_regResponse_reg
- Simplified architecture: HisKA + HATPase_c + Response_reg + Response_reg
- Raw architecture: HisKA[332-398] | HATPase_c[446-561] | Response_reg[579-694] | Response_reg[720-834]
- Domain count: 4
- Matched identifier: HKOC_0504112
- Positioned domains: HisKA 332-398 ; HATPase_c 446-561 ; Response_reg 579-694 ; Response_reg 720-834
Cluster members and taxonomy
Representative gene: GCF_008632235#F2P57_RS06800
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 512 · GCF_008632235
AssemblyASM863223v1 · Scaffoldreference genome · haploid
Genome composition5 072 209 bp · 48,0% GC[Clostridium] symbiosum
Signal transduction countsGenes 115 · HK 58 · RR 54CheA 1 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusLachnoclostridium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Lachnoclostridium
Related genes
Preview from the same derived genome key