1 Response_reg#1
4-107 aa · 104 aa · 43.2% of protein
Raw token
Response_reg:4:5.3e-18:107:106:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
F2P57_RS06620
Response regulator LytTR family
[Clostridium] symbiosum · GCF_008632235
ClassRRTypeLytTRLength241 aaTM0ValidatedNoCompleteYesContexttriad
Gene IDGCF_008632235#F2P57_RS06620Stable P2CS identifier used across views.
GenomeGCF_008632235Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Lachnoclostridium
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length241 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage198 / 241 aa (82.2%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa241 aa
Domain-by-domain annotation2 items
2 LytTR#2
140-233 aa · 94 aa · 39.0% of protein
Raw token
LytTR:140:0.0000000000338:233:101:98- Raw architecture: Response_reg:4:5.3e-18:107:106:111#LytTR:140:0.0000000000338:233:101:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labeltriadGCF_008632235::NZ_VWSY01000001.1::G00027
Group size33 locus tags listed below.
HK / RR1 / 2Counts resolved for the local TCS neighborhood.
Context span1401579-1404578Genomic interval covered by the local TCS group.
Identifiers
Old locus tagF2P57_06620RefSeq proteinWP_243004149.1
Context group ID
GCF_008632235::NZ_VWSY01000001.1::G00027Context members
F2P57_RS06610F2P57_RS06615F2P57_RS06620
Partner locus tags
F2P57_RS06610F2P57_RS06615F2P57_RS06620
Partner old locus tags
F2P57_06610F2P57_06615F2P57_06620
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_243004149.1Primary protein accession used for annex mappings.
UniProt accessionA0AAW6B096Primary UniProt accession resolved in the annex database.
UniProt IDA0AAW6B096_CLOSYDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagF2P57_RS06620Primary locus identifier stored in the genes table.
Old locus tagF2P57_06620Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_VWSY01000001.1Sequence record reported by the local genomic context database.
Genomic interval1 403 853-1 404 578 nt726 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span1 401 579-1 404 578 ntGCF_008632235::NZ_VWSY01000001.1::G00027
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_008632235::NZ_VWSY01000001.1::G00027Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labeltriadNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_VWSY01000001.1All displayed genes belong to this local TCS context.
Neighborhood span1 401 579-1 404 578 nt3 000 nt
Members31 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 401 579 nt1 404 578 nt
Neighborhood gene cards
3 genes in the current local neighborhood.
F2P57_RS06610GCF_008632235#F2P57_RS06610
RRunclassified
1 401 579-1 402 208 nt · Reverse (-)
F2P57_RS06615GCF_008632235#F2P57_RS06615
HKClassic
1 402 189-1 403 610 nt · Reverse (-)
F2P57_RS06620GCF_008632235#F2P57_RS06620
RRLytTRCurrent focus
1 403 853-1 404 578 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003463485#DXA34_RS23515Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0867744
Simplified PFAM architecture for RROC_0867744
PFAM domain coverage: 197 / 241 aa (81.7%)
1 aa241 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[5-107] | LytTR[140-233]
- Domain count: 2
- Matched identifier: RROC_0867744
- Positioned domains: Response_reg 5-107 ; Response_reg 5-107 ; LytTR 140-233 ; LytTR 140-233
Cluster members and taxonomy
Representative gene: GCF_003463485#DXA34_RS23515
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 512 · GCF_008632235
AssemblyASM863223v1 · Scaffoldreference genome · haploid
Genome composition5 072 209 bp · 48,0% GC[Clostridium] symbiosum
Signal transduction countsGenes 115 · HK 58 · RR 54CheA 1 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusLachnoclostridium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Lachnoclostridium
Related genes
Preview from the same derived genome key