1 HAMP#1
183-252 aa · 70 aa · 14.1% of protein
Raw token
HAMP:183:4.27e-16:252:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
F2P57_RS06400
Histidine kinase, Classic
[Clostridium] symbiosum · GCF_008632235
ClassHKTypeClassicLength495 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_008632235#F2P57_RS06400Stable P2CS identifier used across views.
GenomeGCF_008632235Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Lachnoclostridium
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length495 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage249 / 495 aa (50.3%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa495 aa
Domain-by-domain annotation3 items
2 HisKA#2
266-330 aa · 65 aa · 13.1% of protein
Raw token
HisKA:266:2.49e-16:330:65:643 HATPase_c#3
377-490 aa · 114 aa · 23.0% of protein
Raw token
HATPase_c:377:2.95e-32:490:114:109- Raw architecture: HAMP:183:4.27e-16:252:70:69#HisKA:266:2.49e-16:330:65:64#HATPase_c:377:2.95e-32:490:114:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_008632235::NZ_VWSY01000001.1::G00026
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span1351792-1353965Genomic interval covered by the local TCS group.
Identifiers
Old locus tagF2P57_06400RefSeq proteinWP_003498065.1
Context group ID
GCF_008632235::NZ_VWSY01000001.1::G00026Context members
F2P57_RS06395F2P57_RS06400
Partner locus tags
F2P57_RS06395F2P57_RS06400
Partner old locus tags
F2P57_06395F2P57_06400
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_003498065.1Primary protein accession used for annex mappings.
UniProt accessionE7GI40Primary UniProt accession resolved in the annex database.
UniProt IDE7GI40_CLOS6Display identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagF2P57_RS06400Primary locus identifier stored in the genes table.
Old locus tagF2P57_06400Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_VWSY01000001.1Sequence record reported by the local genomic context database.
Genomic interval1 352 478-1 353 965 nt1 488 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span1 351 792-1 353 965 ntGCF_008632235::NZ_VWSY01000001.1::G00026
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_008632235::NZ_VWSY01000001.1::G00026Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_VWSY01000001.1All displayed genes belong to this local TCS context.
Neighborhood span1 351 792-1 353 965 nt2 174 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 351 792 nt1 353 965 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
F2P57_RS06395GCF_008632235#F2P57_RS06395
RROmpR
1 351 792-1 352 481 nt · Reverse (-)
F2P57_RS06400GCF_008632235#F2P57_RS06400
HKClassicCurrent focus
1 352 478-1 353 965 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000189595#HMPREF9474_RS02930Use this link to inspect the representative gene detail.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1504326
Simplified PFAM architecture for HKOC_1504326
PFAM domain coverage: 229 / 495 aa (46.3%)
1 aa495 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[200-252] | HisKA[265-329] | HATPase_c[378-488]
- Domain count: 3
- Matched identifier: HKOC_1504326
- Positioned domains: HAMP 200-252 ; HisKA 265-329 ; HATPase_c 378-488
Cluster members and taxonomy
Representative gene: GCF_000189595#HMPREF9474_RS02930
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 512 · GCF_008632235
AssemblyASM863223v1 · Scaffoldreference genome · haploid
Genome composition5 072 209 bp · 48,0% GC[Clostridium] symbiosum
Signal transduction countsGenes 115 · HK 58 · RR 54CheA 1 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusLachnoclostridium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Lachnoclostridium
Related genes
Preview from the same derived genome key