1 Response_reg#1
12-121 aa · 110 aa · 44.7% of protein
Raw token
Response_reg:12:8.35e-35:121:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
F2P57_RS06285
Response regulator OmpR family
[Clostridium] symbiosum · GCF_008632235
ClassRRTypeOmpRLength246 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_008632235#F2P57_RS06285Stable P2CS identifier used across views.
GenomeGCF_008632235Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Lachnoclostridium
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length246 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage186 / 246 aa (75.6%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa246 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
167-242 aa · 76 aa · 30.9% of protein
Raw token
Trans_reg_C:167:6.14e-29:242:77:77- Raw architecture: Response_reg:12:8.35e-35:121:111:111#Trans_reg_C:167:6.14e-29:242:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_008632235::NZ_VWSY01000001.1::G00025
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span1325378-1327808Genomic interval covered by the local TCS group.
Identifiers
Old locus tagF2P57_06285RefSeq proteinWP_003498049.1
Context group ID
GCF_008632235::NZ_VWSY01000001.1::G00025Context members
F2P57_RS06280F2P57_RS06285
Partner locus tags
F2P57_RS06280F2P57_RS06285
Partner old locus tags
F2P57_06280F2P57_06285
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_003498049.1Primary protein accession used for annex mappings.
UniProt accessionE7GI28Primary UniProt accession resolved in the annex database.
UniProt IDE7GI28_CLOS6Display identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagF2P57_RS06285Primary locus identifier stored in the genes table.
Old locus tagF2P57_06285Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_VWSY01000001.1Sequence record reported by the local genomic context database.
Genomic interval1 327 068-1 327 808 nt741 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span1 325 378-1 327 808 ntGCF_008632235::NZ_VWSY01000001.1::G00025
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_008632235::NZ_VWSY01000001.1::G00025Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_VWSY01000001.1All displayed genes belong to this local TCS context.
Neighborhood span1 325 378-1 327 808 nt2 431 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 325 378 nt1 327 808 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
F2P57_RS06280GCF_008632235#F2P57_RS06280
HKClassic
1 325 378-1 327 096 nt · Reverse (-)
F2P57_RS06285GCF_008632235#F2P57_RS06285
RROmpRCurrent focus
1 327 068-1 327 808 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000189595#HMPREF9474_RS02865Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0769503
Simplified PFAM architecture for RROC_0769503
PFAM domain coverage: 184 / 246 aa (74.8%)
1 aa246 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[12-120] | Trans_reg_C[167-241]
- Domain count: 2
- Matched identifier: RROC_0769503
- Positioned domains: Response_reg 12-120 ; Response_reg 12-120 ; Trans_reg_C 167-241 ; Trans_reg_C 167-241
Cluster members and taxonomy
Representative gene: GCF_000189595#HMPREF9474_RS02865
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 512 · GCF_008632235
AssemblyASM863223v1 · Scaffoldreference genome · haploid
Genome composition5 072 209 bp · 48,0% GC[Clostridium] symbiosum
Signal transduction countsGenes 115 · HK 58 · RR 54CheA 1 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusLachnoclostridium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Lachnoclostridium
Related genes
Preview from the same derived genome key