1 HisKA#1
341-406 aa · 66 aa · 9.0% of protein
Raw token
HisKA:341:4.46e-17:406:66:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
F2P57_RS05145
Histidine kinase, Hybrid
[Clostridium] symbiosum · GCF_008632235
ClassHKTypeHybridLength730 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_008632235#F2P57_RS05145Stable P2CS identifier used across views.
GenomeGCF_008632235Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Lachnoclostridium
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_cResponse_reg
Protein length730 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage301 / 730 aa (41.2%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_c,1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa730 aa
Domain-by-domain annotation3 items
2 HATPase_c#2
454-571 aa · 118 aa · 16.2% of protein
Raw token
HATPase_c:454:7.04e-32:571:118:1093 Response_reg#3
605-721 aa · 117 aa · 16.0% of protein
Raw token
Response_reg:605:2.78e-28:721:117:111- Raw architecture: HisKA:341:4.46e-17:406:66:64#HATPase_c:454:7.04e-32:571:118:109#Response_reg:605:2.78e-28:721:117:111
- Domain description: 1 HisKA,1 HATPase_c,1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_008632235::NZ_VWSY01000001.1::G00022
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span1090922-1093114Genomic interval covered by the local TCS group.
Identifiers
Old locus tagF2P57_05145RefSeq proteinWP_243133684.1
Context group ID
GCF_008632235::NZ_VWSY01000001.1::G00022Context members
F2P57_RS05145
Partner locus tags
F2P57_RS05145
Partner old locus tags
F2P57_05145
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_243133684.1Primary protein accession used for annex mappings.
UniProt accessionA0AAW6AQT9Primary UniProt accession resolved in the annex database.
UniProt IDA0AAW6AQT9_CLOSYDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagF2P57_RS05145Primary locus identifier stored in the genes table.
Old locus tagF2P57_05145Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_VWSY01000001.1Sequence record reported by the local genomic context database.
Genomic interval1 090 922-1 093 114 nt2 193 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span1 090 922-1 093 114 ntGCF_008632235::NZ_VWSY01000001.1::G00022
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_008632235::NZ_VWSY01000001.1::G00022Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_VWSY01000001.1All displayed genes belong to this local TCS context.
Neighborhood span1 090 922-1 093 114 nt2 193 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 090 922 nt1 093 114 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
F2P57_RS05145GCF_008632235#F2P57_RS05145
HKHybridCurrent focus
1 090 922-1 093 114 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_008632235#F2P57_RS05145The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c + Response_reg3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0712749
Simplified PFAM architecture for HKOC_0712749
PFAM domain coverage: 300 / 730 aa (41.1%)
1 aa730 aa
HisKAHATPase_cResponse_reg
- Simplified architecture: HisKA + HATPase_c + Response_reg
- Raw architecture: HisKA[341-406] | HATPase_c[454-571] | Response_reg[605-720]
- Domain count: 3
- Matched identifier: HKOC_0712749
- Positioned domains: HisKA 341-406 ; HATPase_c 454-571 ; Response_reg 605-720
Cluster members and taxonomy
Representative gene: GCF_008632235#F2P57_RS05145
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 512 · GCF_008632235
AssemblyASM863223v1 · Scaffoldreference genome · haploid
Genome composition5 072 209 bp · 48,0% GC[Clostridium] symbiosum
Signal transduction countsGenes 115 · HK 58 · RR 54CheA 1 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusLachnoclostridium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Lachnoclostridium
Related genes
Preview from the same derived genome key