1 HisKA#1
209-282 aa · 74 aa · 16.4% of protein
Raw token
HisKA:209:0.0000000000000199:282:74:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
F2P57_RS01795
Histidine kinase, Classic
[Clostridium] symbiosum · GCF_008632235
ClassHKTypeClassicLength450 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_008632235#F2P57_RS01795Stable P2CS identifier used across views.
GenomeGCF_008632235Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Lachnoclostridium
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length450 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage195 / 450 aa (43.3%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa450 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
329-449 aa · 121 aa · 26.9% of protein
Raw token
HATPase_c:329:1.34e-28:449:121:109- Raw architecture: HisKA:209:0.0000000000000199:282:74:64#HATPase_c:329:1.34e-28:449:121:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_008632235::NZ_VWSY01000001.1::G00015
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span398019-399371Genomic interval covered by the local TCS group.
Identifiers
Old locus tagF2P57_01795RefSeq proteinWP_150026822.1
Context group ID
GCF_008632235::NZ_VWSY01000001.1::G00015Context members
F2P57_RS01795
Partner locus tags
F2P57_RS01795
Partner old locus tags
F2P57_01795
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_150026822.1Primary protein accession used for annex mappings.
UniProt accessionA0AAW6B319Primary UniProt accession resolved in the annex database.
UniProt IDA0AAW6B319_CLOSYDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagF2P57_RS01795Primary locus identifier stored in the genes table.
Old locus tagF2P57_01795Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_VWSY01000001.1Sequence record reported by the local genomic context database.
Genomic interval398 019-399 371 nt1 353 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span398 019-399 371 ntGCF_008632235::NZ_VWSY01000001.1::G00015
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_008632235::NZ_VWSY01000001.1::G00015Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_VWSY01000001.1All displayed genes belong to this local TCS context.
Neighborhood span398 019-399 371 nt1 353 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
398 019 nt399 371 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
F2P57_RS01795GCF_008632235#F2P57_RS01795
HKClassicCurrent focus
398 019-399 371 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_008632235#F2P57_RS01795The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1965682
Simplified PFAM architecture for HKOC_1965682
PFAM domain coverage: 192 / 450 aa (42.7%)
1 aa450 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[210-282] | HATPase_c[330-448]
- Domain count: 2
- Matched identifier: HKOC_1965682
- Positioned domains: HisKA 210-282 ; HATPase_c 330-448
Cluster members and taxonomy
Representative gene: GCF_008632235#F2P57_RS01795
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 512 · GCF_008632235
AssemblyASM863223v1 · Scaffoldreference genome · haploid
Genome composition5 072 209 bp · 48,0% GC[Clostridium] symbiosum
Signal transduction countsGenes 115 · HK 58 · RR 54CheA 1 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusLachnoclostridium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Lachnoclostridium
Related genes
Preview from the same derived genome key