1 HAMP#1
170-240 aa · 71 aa · 15.2% of protein
Raw token
HAMP:170:0.00000000000787:240:71:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
F2P57_RS01615
Histidine kinase, Classic
[Clostridium] symbiosum · GCF_008632235
ClassHKTypeClassicLength466 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_008632235#F2P57_RS01615Stable P2CS identifier used across views.
GenomeGCF_008632235Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Lachnoclostridium
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length466 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage245 / 466 aa (52.6%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa466 aa
Domain-by-domain annotation3 items
2 HisKA#2
244-307 aa · 64 aa · 13.7% of protein
Raw token
HisKA:244:0.000000000356:307:64:643 HATPase_c#3
353-462 aa · 110 aa · 23.6% of protein
Raw token
HATPase_c:353:2.96e-33:462:110:109- Raw architecture: HAMP:170:0.00000000000787:240:71:69#HisKA:244:0.000000000356:307:64:64#HATPase_c:353:2.96e-33:462:110:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_008632235::NZ_VWSY01000001.1::G00013
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span360950-363048Genomic interval covered by the local TCS group.
Identifiers
Old locus tagF2P57_01615RefSeq proteinWP_150026808.1
Context group ID
GCF_008632235::NZ_VWSY01000001.1::G00013Context members
F2P57_RS01615F2P57_RS01620
Partner locus tags
F2P57_RS01615F2P57_RS01620
Partner old locus tags
F2P57_01615F2P57_01620
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_150026808.1Primary protein accession used for annex mappings.
UniProt accessionA0AAW6B2A3Primary UniProt accession resolved in the annex database.
UniProt IDA0AAW6B2A3_CLOSYDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagF2P57_RS01615Primary locus identifier stored in the genes table.
Old locus tagF2P57_01615Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_VWSY01000001.1Sequence record reported by the local genomic context database.
Genomic interval360 950-362 350 nt1 401 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span360 950-363 048 ntGCF_008632235::NZ_VWSY01000001.1::G00013
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_008632235::NZ_VWSY01000001.1::G00013Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_VWSY01000001.1All displayed genes belong to this local TCS context.
Neighborhood span360 950-363 048 nt2 099 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
360 950 nt363 048 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
F2P57_RS01615GCF_008632235#F2P57_RS01615
HKClassicCurrent focus
360 950-362 350 nt · Reverse (-)
F2P57_RS01620GCF_008632235#F2P57_RS01620
RROmpR
362 347-363 048 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_008632235#F2P57_RS01615The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1765484
Simplified PFAM architecture for HKOC_1765484
PFAM domain coverage: 228 / 466 aa (48.9%)
1 aa466 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[187-240] | HisKA[244-306] | HATPase_c[354-464]
- Domain count: 3
- Matched identifier: HKOC_1765484
- Positioned domains: HAMP 187-240 ; HisKA 244-306 ; HATPase_c 354-464
Cluster members and taxonomy
Representative gene: GCF_008632235#F2P57_RS01615
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 512 · GCF_008632235
AssemblyASM863223v1 · Scaffoldreference genome · haploid
Genome composition5 072 209 bp · 48,0% GC[Clostridium] symbiosum
Signal transduction countsGenes 115 · HK 58 · RR 54CheA 1 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusLachnoclostridium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Lachnoclostridium
Related genes
Preview from the same derived genome key