1 Response_reg#1
7-118 aa · 112 aa · 35.9% of protein
Raw token
Response_reg:7:2.83e-30:118:112:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
F2P57_RS01145
Response regulator, PleD family
[Clostridium] symbiosum · GCF_008632235
ClassRRTypePleDLength312 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_008632235#F2P57_RS01145Stable P2CS identifier used across views.
GenomeGCF_008632235Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Lachnoclostridium
Domain signature
Compact overview inferred from the domain field
Response_regGGDEF
Protein length312 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage265 / 312 aa (84.9%)Merged over positioned domains only.
Domain description1 Response_reg,1 GGDEFSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa312 aa
Domain-by-domain annotation2 items
2 GGDEF#2
148-300 aa · 153 aa · 49.0% of protein
Raw token
GGDEF:148:9.1e-38:300:160:160- Raw architecture: Response_reg:7:2.83e-30:118:112:111#GGDEF:148:9.1e-38:300:160:160
- Domain description: 1 Response_reg,1 GGDEF
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_008632235::NZ_VWSY01000001.1::G00010
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span254207-257055Genomic interval covered by the local TCS group.
Identifiers
Old locus tagF2P57_01145RefSeq proteinWP_144233131.1
Context group ID
GCF_008632235::NZ_VWSY01000001.1::G00010Context members
F2P57_RS01140F2P57_RS01145
Partner locus tags
F2P57_RS01140F2P57_RS01145
Partner old locus tags
F2P57_01140F2P57_01145
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_144233131.1Primary protein accession used for annex mappings.
UniProt accessionA0AAW6ANI1Primary UniProt accession resolved in the annex database.
UniProt IDA0AAW6ANI1_CLOSYDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagF2P57_RS01145Primary locus identifier stored in the genes table.
Old locus tagF2P57_01145Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_VWSY01000001.1Sequence record reported by the local genomic context database.
Genomic interval256 117-257 055 nt939 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span254 207-257 055 ntGCF_008632235::NZ_VWSY01000001.1::G00010
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_008632235::NZ_VWSY01000001.1::G00010Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_VWSY01000001.1All displayed genes belong to this local TCS context.
Neighborhood span254 207-257 055 nt2 849 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
254 207 nt257 055 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
F2P57_RS01140GCF_008632235#F2P57_RS01140
HKCheA
254 207-256 111 nt · Reverse (-)
F2P57_RS01145GCF_008632235#F2P57_RS01145
RRPleDCurrent focus
256 117-257 055 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_008632235#F2P57_RS01145The current gene is the representative for this cluster.
PFAM architectureResponse_reg + GGDEF2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0547781
Simplified PFAM architecture for RROC_0547781
PFAM domain coverage: 264 / 312 aa (84.6%)
1 aa312 aa
Response_regGGDEF
- Simplified architecture: Response_reg + GGDEF
- Raw architecture: Response_reg[7-118] | GGDEF[149-300]
- Domain count: 2
- Matched identifier: RROC_0547781
- Positioned domains: Response_reg 7-118 ; Response_reg 7-118 ; GGDEF 149-300 ; GGDEF 149-300
Cluster members and taxonomy
Representative gene: GCF_008632235#F2P57_RS01145
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 512 · GCF_008632235
AssemblyASM863223v1 · Scaffoldreference genome · haploid
Genome composition5 072 209 bp · 48,0% GC[Clostridium] symbiosum
Signal transduction countsGenes 115 · HK 58 · RR 54CheA 1 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusLachnoclostridium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Lachnoclostridium
Related genes
Preview from the same derived genome key