1 Hpt#1
10-101 aa · 92 aa · 14.5% of protein
Raw token
Hpt:10:0.00000000000132:101:92:84P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
F2P57_RS01140
Histidine kinase, CheA
[Clostridium] symbiosum · GCF_008632235
ClassHKTypeCheALength634 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_008632235#F2P57_RS01140Stable P2CS identifier used across views.
GenomeGCF_008632235Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Lachnoclostridium
Domain signature
Compact overview inferred from the domain field
HptH-kinase_dimHATPase_cCheW
Protein length634 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage417 / 634 aa (65.8%)Merged over positioned domains only.
Domain description1 Hpt,1 H-kinase_dim,1 HATPase_c,1 CheWSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa634 aa
Domain-by-domain annotation4 items
2 H-kinase_dim#2
245-301 aa · 57 aa · 9.0% of protein
Raw token
H-kinase_dim:245:0.000000568:301:65:673 HATPase_c#3
349-487 aa · 139 aa · 21.9% of protein
Raw token
HATPase_c:349:2.15e-21:487:139:1094 CheW#4
499-627 aa · 129 aa · 20.3% of protein
Raw token
CheW:499:3.22e-19:627:133:138- Raw architecture: Hpt:10:0.00000000000132:101:92:84#H-kinase_dim:245:0.000000568:301:65:67#HATPase_c:349:2.15e-21:487:139:109#CheW:499:3.22e-19:627:133:138
- Domain description: 1 Hpt,1 H-kinase_dim,1 HATPase_c,1 CheW
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_008632235::NZ_VWSY01000001.1::G00010
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span254207-257055Genomic interval covered by the local TCS group.
Identifiers
Old locus tagF2P57_01140RefSeq proteinWP_150026752.1
Context group ID
GCF_008632235::NZ_VWSY01000001.1::G00010Context members
F2P57_RS01140F2P57_RS01145
Partner locus tags
F2P57_RS01140F2P57_RS01145
Partner old locus tags
F2P57_01140F2P57_01145
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_150026752.1Primary protein accession used for annex mappings.
UniProt accessionA0AAW6AP62Primary UniProt accession resolved in the annex database.
UniProt IDA0AAW6AP62_CLOSYDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagF2P57_RS01140Primary locus identifier stored in the genes table.
Old locus tagF2P57_01140Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_VWSY01000001.1Sequence record reported by the local genomic context database.
Genomic interval254 207-256 111 nt1 905 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span254 207-257 055 ntGCF_008632235::NZ_VWSY01000001.1::G00010
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_008632235::NZ_VWSY01000001.1::G00010Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_VWSY01000001.1All displayed genes belong to this local TCS context.
Neighborhood span254 207-257 055 nt2 849 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
254 207 nt257 055 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
F2P57_RS01140GCF_008632235#F2P57_RS01140
HKCheACurrent focus
254 207-256 111 nt · Reverse (-)
F2P57_RS01145GCF_008632235#F2P57_RS01145
RRPleD
256 117-257 055 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_008632235#F2P57_RS01140The current gene is the representative for this cluster.
PFAM architectureHpt + P2 + HATPase_c + CheW4 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0936509
Simplified PFAM architecture for HKOC_0936509
PFAM domain coverage: 428 / 634 aa (67.5%)
1 aa634 aa
HptP2HATPase_cCheW
- Simplified architecture: Hpt + P2 + HATPase_c + CheW
- Raw architecture: Hpt[10-92] | P2[142-220] | HATPase_c[351-487] | CheW[498-626]
- Domain count: 4
- Matched identifier: HKOC_0936509
- Positioned domains: Hpt 10-92 ; P2 142-220 ; HATPase_c 351-487 ; CheW 498-626
Cluster members and taxonomy
Representative gene: GCF_008632235#F2P57_RS01140
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 512 · GCF_008632235
AssemblyASM863223v1 · Scaffoldreference genome · haploid
Genome composition5 072 209 bp · 48,0% GC[Clostridium] symbiosum
Signal transduction countsGenes 115 · HK 58 · RR 54CheA 1 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusLachnoclostridium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Lachnoclostridium
Related genes
Preview from the same derived genome key