1 dCache_1#1
42-221 aa · 180 aa · 31.5% of protein
Raw token
dCache_1:42:0.0000124:221:181:195P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
FXV78_RS07240
Histidine kinase, Classic
Mediterraneibacter gnavus ATCC 29149 · GCF_008121495
ClassHKTypeClassicLength571 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_008121495#FXV78_RS07240Stable P2CS identifier used across views.
GenomeGCF_008121495Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
dCache_1HAMPHis_kinaseHATPase_c
Protein length571 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage430 / 571 aa (75.3%)Merged over positioned domains only.
Domain description1 dCache_1,1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa571 aa
Domain-by-domain annotation4 items
2 HAMP#2
281-347 aa · 67 aa · 11.7% of protein
Raw token
HAMP:281:0.0000000000319:347:67:693 His_kinase#3
362-441 aa · 80 aa · 14.0% of protein
Raw token
His_kinase:362:2.35e-28:441:80:804 HATPase_c#4
458-560 aa · 103 aa · 18.0% of protein
Raw token
HATPase_c:458:0.000000000000165:560:112:109- Raw architecture: dCache_1:42:0.0000124:221:181:195#HAMP:281:0.0000000000319:347:67:69#His_kinase:362:2.35e-28:441:80:80#HATPase_c:458:0.000000000000165:560:112:109
- Domain description: 1 dCache_1,1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_008121495::NZ_CP043051.1::G00021
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span1497176-1500401Genomic interval covered by the local TCS group.
Identifiers
Old locus tagFXV78_07240RefSeq proteinWP_004843711.1
Context group ID
GCF_008121495::NZ_CP043051.1::G00021Context members
FXV78_RS07235FXV78_RS07240
Partner locus tags
FXV78_RS07235FXV78_RS07240
Partner old locus tags
FXV78_07235FXV78_07240
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_004843711.1Primary protein accession used for annex mappings.
UniProt accessionA7B595Primary UniProt accession resolved in the annex database.
UniProt IDA7B595_MEDG7Display identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagFXV78_RS07240Primary locus identifier stored in the genes table.
Old locus tagFXV78_07240Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP043051.1Sequence record reported by the local genomic context database.
Genomic interval1 498 686-1 500 401 nt1 716 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span1 497 176-1 500 401 ntGCF_008121495::NZ_CP043051.1::G00021
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_008121495::NZ_CP043051.1::G00021Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP043051.1All displayed genes belong to this local TCS context.
Neighborhood span1 497 176-1 500 401 nt3 226 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 497 176 nt1 500 401 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
FXV78_RS07235GCF_008121495#FXV78_RS07235
RRunclassified
1 497 176-1 498 714 nt · Forward (+)
FXV78_RS07240GCF_008121495#FXV78_RS07240
HKClassicCurrent focus
1 498 686-1 500 401 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000169475#RUMGNA_RS12025Use this link to inspect the representative gene detail.
PFAM architectureHAMP + His_kinase + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1207413
Simplified PFAM architecture for HKOC_1207413
PFAM domain coverage: 230 / 571 aa (40.3%)
1 aa571 aa
HAMPHis_kinaseHATPase_c
- Simplified architecture: HAMP + His_kinase + HATPase_c
- Raw architecture: HAMP[295-346] | His_kinase[363-439] | HATPase_c[459-559]
- Domain count: 3
- Matched identifier: HKOC_1207413
- Positioned domains: HAMP 295-346 ; His_kinase 363-439 ; HATPase_c 459-559
Cluster members and taxonomy
Representative gene: GCF_000169475#RUMGNA_RS12025
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 411 470 · GCF_008121495
AssemblyASM812149v1 · Complete Genomehaploid
Genome composition3 552 639 bp · 43,0% GCMediterraneibacter gnavus ATCC 29149
Signal transduction countsGenes 84 · HK 40 · RR 43CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key