1 Response_reg#1
6-114 aa · 109 aa · 45.8% of protein
Raw token
Response_reg:6:0.00000000000000147:114:112:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
FXV78_RS04325
Response regulator LytTR family
Mediterraneibacter gnavus ATCC 29149 · GCF_008121495
ClassRRTypeLytTRLength238 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_008121495#FXV78_RS04325Stable P2CS identifier used across views.
GenomeGCF_008121495Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length238 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage202 / 238 aa (84.9%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa238 aa
Domain-by-domain annotation2 items
2 LytTR#2
139-231 aa · 93 aa · 39.1% of protein
Raw token
LytTR:139:2.26e-17:231:98:98- Raw architecture: Response_reg:6:0.00000000000000147:114:112:111#LytTR:139:2.26e-17:231:98:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_008121495::NZ_CP043051.1::G00009
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span886265-886981Genomic interval covered by the local TCS group.
Identifiers
Old locus tagFXV78_04325RefSeq proteinWP_004223809.1
Context group ID
GCF_008121495::NZ_CP043051.1::G00009Context members
FXV78_RS04325
Partner locus tags
FXV78_RS04325
Partner old locus tags
FXV78_04325
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_004223809.1Primary protein accession used for annex mappings.
UniProt accessionA7B1H0Primary UniProt accession resolved in the annex database.
UniProt IDA7B1H0_MEDG7Display identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagFXV78_RS04325Primary locus identifier stored in the genes table.
Old locus tagFXV78_04325Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP043051.1Sequence record reported by the local genomic context database.
Genomic interval886 265-886 981 nt717 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span886 265-886 981 ntGCF_008121495::NZ_CP043051.1::G00009
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_008121495::NZ_CP043051.1::G00009Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP043051.1All displayed genes belong to this local TCS context.
Neighborhood span886 265-886 981 nt717 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
886 265 nt886 981 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
FXV78_RS04325GCF_008121495#FXV78_RS04325
RRLytTRCurrent focus
886 265-886 981 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000156675#BLAHAN_RS14190Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0932541
Simplified PFAM architecture for RROC_0932541
PFAM domain coverage: 200 / 238 aa (84.0%)
1 aa238 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[6-114] | LytTR[141-231]
- Domain count: 2
- Matched identifier: RROC_0932541
- Positioned domains: Response_reg 6-114 ; Response_reg 6-114 ; LytTR 141-231 ; LytTR 141-231
Cluster members and taxonomy
Representative gene: GCF_000156675#BLAHAN_RS14190
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 411 470 · GCF_008121495
AssemblyASM812149v1 · Complete Genomehaploid
Genome composition3 552 639 bp · 43,0% GCMediterraneibacter gnavus ATCC 29149
Signal transduction countsGenes 84 · HK 40 · RR 43CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key