1 Response_reg#1
5-111 aa · 107 aa · 49.3% of protein
Raw token
Response_reg:5:7.07e-28:111:109:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
FXV78_RS00880
Response regulator OmpR family
Mediterraneibacter gnavus ATCC 29149 · GCF_008121495
ClassRRTypeOmpRLength217 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_008121495#FXV78_RS00880Stable P2CS identifier used across views.
GenomeGCF_008121495Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length217 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage181 / 217 aa (83.4%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa217 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
142-215 aa · 74 aa · 34.1% of protein
Raw token
Trans_reg_C:142:6.26e-26:215:77:77- Raw architecture: Response_reg:5:7.07e-28:111:109:111#Trans_reg_C:142:6.26e-26:215:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_008121495::NZ_CP043051.1::G00002
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span209050-210625Genomic interval covered by the local TCS group.
Identifiers
Old locus tagFXV78_00880RefSeq proteinWP_004844462.1
Context group ID
GCF_008121495::NZ_CP043051.1::G00002Context members
FXV78_RS00875FXV78_RS00880
Partner locus tags
FXV78_RS00875FXV78_RS00880
Partner old locus tags
FXV78_00875FXV78_00880
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_004844462.1Primary protein accession used for annex mappings.
UniProt accessionA7B7B8Primary UniProt accession resolved in the annex database.
UniProt IDA7B7B8_MEDG7Display identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagFXV78_RS00880Primary locus identifier stored in the genes table.
Old locus tagFXV78_00880Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP043051.1Sequence record reported by the local genomic context database.
Genomic interval209 972-210 625 nt654 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span209 050-210 625 ntGCF_008121495::NZ_CP043051.1::G00002
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_008121495::NZ_CP043051.1::G00002Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP043051.1All displayed genes belong to this local TCS context.
Neighborhood span209 050-210 625 nt1 576 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
209 050 nt210 625 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
FXV78_RS00875GCF_008121495#FXV78_RS00875
HKClassic
209 050-209 970 nt · Reverse (-)
FXV78_RS00880GCF_008121495#FXV78_RS00880
RROmpRCurrent focus
209 972-210 625 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000169475#RUMGNA_RS15275Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1847765
Simplified PFAM architecture for RROC_1847765
PFAM domain coverage: 182 / 217 aa (83.9%)
1 aa217 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-111] | Trans_reg_C[142-215]
- Domain count: 2
- Matched identifier: RROC_1847765
- Positioned domains: Response_reg 4-111 ; Response_reg 4-111 ; Trans_reg_C 142-215 ; Trans_reg_C 142-215
Cluster members and taxonomy
Representative gene: GCF_000169475#RUMGNA_RS15275
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 411 470 · GCF_008121495
AssemblyASM812149v1 · Complete Genomehaploid
Genome composition3 552 639 bp · 43,0% GCMediterraneibacter gnavus ATCC 29149
Signal transduction countsGenes 84 · HK 40 · RR 43CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key