1 HAMP#1
164-226 aa · 63 aa · 13.8% of protein
Raw token
HAMP:164:0.00000000000029:226:63:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DN408_RS13405
Histidine kinase, Classic
Bacillus sp. AR13-1 · GCF_008042285
ClassHKTypeClassicLength455 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_008042285#DN408_RS13405Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length455 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage243 / 455 aa (53.4%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa455 aa
Domain-by-domain annotation3 items
2 HisKA#2
230-296 aa · 67 aa · 14.7% of protein
Raw token
HisKA:230:0.000000000000401:296:67:643 HATPase_c#3
340-452 aa · 113 aa · 24.8% of protein
Raw token
HATPase_c:340:3.63e-32:452:113:109- Raw architecture: HAMP:164:0.00000000000029:226:63:69#HisKA:230:0.000000000000401:296:67:64#HATPase_c:340:3.63e-32:452:113:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_008042285::NZ_QNUA01000015.1::G00008
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span10469-12507Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDN408_13665RefSeq proteinWP_002128359.1
Context group ID
GCF_008042285::NZ_QNUA01000015.1::G00008Context members
DN408_RS13400DN408_RS13405
Partner locus tags
DN408_RS13400DN408_RS13405
Partner old locus tags
DN408_13660DN408_13665
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_002128359.1Primary protein accession used for annex mappings.
UniProt accessionR8MW45Primary UniProt accession resolved in the annex database.
UniProt IDR8MW45_BACCXDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDN408_RS13405Primary locus identifier stored in the genes table.
Old locus tagDN408_13665Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QNUA01000015.1Sequence record reported by the local genomic context database.
Genomic interval11 140-12 507 nt1 368 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span10 469-12 507 ntGCF_008042285::NZ_QNUA01000015.1::G00008
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_008042285::NZ_QNUA01000015.1::G00008Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QNUA01000015.1All displayed genes belong to this local TCS context.
Neighborhood span10 469-12 507 nt2 039 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
10 469 nt12 507 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DN408_RS13400GCF_008042285#DN408_RS13400
RROmpR
10 469-11 143 nt · Forward (+)
DN408_RS13405GCF_008042285#DN408_RS13405
HKClassicCurrent focus
11 140-12 507 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000003925#BMYCO0001_RS15075Use this link to inspect the representative gene detail.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1899509
Simplified PFAM architecture for HKOC_1899509
PFAM domain coverage: 225 / 455 aa (49.5%)
1 aa455 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[179-226] | HisKA[230-295] | HATPase_c[341-451]
- Domain count: 3
- Matched identifier: HKOC_1899509
- Positioned domains: HAMP 179-226 ; HisKA 230-295 ; HATPase_c 341-451
Cluster members and taxonomy
Representative gene: GCF_000003925#BMYCO0001_RS15075
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 217 833 · GCF_008042285
AssemblyASM804228v1 · Scaffoldhaploid
Genome composition5 940 870 bp · 35,0% GCBacillus sp. AR13-1
Signal transduction countsGenes 137 · HK 73 · RR 64CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key