1 HisKA#1
85-152 aa · 68 aa · 21.9% of protein
Raw token
HisKA:85:0.0000000000000177:152:68:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DN408_RS01840
Histidine kinase, Classic
Bacillus sp. AR13-1 · GCF_008042285
ClassHKTypeClassicLength311 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_008042285#DN408_RS01840Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length311 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage177 / 311 aa (56.9%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa311 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
198-306 aa · 109 aa · 35.0% of protein
Raw token
HATPase_c:198:6.1e-26:306:109:109- Raw architecture: HisKA:85:0.0000000000000177:152:68:64#HATPase_c:198:6.1e-26:306:109:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_008042285::NZ_QNUA01000005.1::G00055
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span6915-8544Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDN408_01870RefSeq proteinWP_078177701.1
Context group ID
GCF_008042285::NZ_QNUA01000005.1::G00055Context members
DN408_RS01840DN408_RS01845
Partner locus tags
DN408_RS01840DN408_RS01845
Partner old locus tags
DN408_01870DN408_01875
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_078177701.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDN408_RS01840Primary locus identifier stored in the genes table.
Old locus tagDN408_01870Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QNUA01000005.1Sequence record reported by the local genomic context database.
Genomic interval6 915-7 850 nt936 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span6 915-8 544 ntGCF_008042285::NZ_QNUA01000005.1::G00055
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_008042285::NZ_QNUA01000005.1::G00055Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QNUA01000005.1All displayed genes belong to this local TCS context.
Neighborhood span6 915-8 544 nt1 630 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
6 915 nt8 544 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DN408_RS01840GCF_008042285#DN408_RS01840
HKClassicCurrent focus
6 915-7 850 nt · Reverse (-)
DN408_RS01845GCF_008042285#DN408_RS01845
RROmpR
7 852-8 544 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002014545#BW891_RS00055Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2876833
Simplified PFAM architecture for HKOC_2876833
PFAM domain coverage: 173 / 311 aa (55.6%)
1 aa311 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[86-152] | HATPase_c[201-306]
- Domain count: 2
- Matched identifier: HKOC_2876833
- Positioned domains: HisKA 86-152 ; HATPase_c 201-306
Cluster members and taxonomy
Representative gene: GCF_002014545#BW891_RS00055
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 217 833 · GCF_008042285
AssemblyASM804228v1 · Scaffoldhaploid
Genome composition5 940 870 bp · 35,0% GCBacillus sp. AR13-1
Signal transduction countsGenes 137 · HK 73 · RR 64CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key