1 Response_reg#1
4-114 aa · 111 aa · 49.6% of protein
Raw token
Response_reg:4:1.86e-34:114:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DN408_RS13400
Response regulator OmpR family
Bacillus sp. AR13-1 · GCF_008042285
ClassRRTypeOmpRLength224 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_008042285#DN408_RS13400Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length224 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage185 / 224 aa (82.6%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa224 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
147-220 aa · 74 aa · 33.0% of protein
Raw token
Trans_reg_C:147:5.08e-27:220:76:77- Raw architecture: Response_reg:4:1.86e-34:114:111:111#Trans_reg_C:147:5.08e-27:220:76:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_008042285::NZ_QNUA01000015.1::G00008
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span10469-12507Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDN408_13660RefSeq proteinWP_001142154.1
Context group ID
GCF_008042285::NZ_QNUA01000015.1::G00008Context members
DN408_RS13400DN408_RS13405
Partner locus tags
DN408_RS13400DN408_RS13405
Partner old locus tags
DN408_13660DN408_13665
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_001142154.1Primary protein accession used for annex mappings.
UniProt accessionA0A243ADH7Primary UniProt accession resolved in the annex database.
UniProt IDA0A243ADH7_BACTUDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDN408_RS13400Primary locus identifier stored in the genes table.
Old locus tagDN408_13660Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QNUA01000015.1Sequence record reported by the local genomic context database.
Genomic interval10 469-11 143 nt675 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span10 469-12 507 ntGCF_008042285::NZ_QNUA01000015.1::G00008
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_008042285::NZ_QNUA01000015.1::G00008Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QNUA01000015.1All displayed genes belong to this local TCS context.
Neighborhood span10 469-12 507 nt2 039 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
10 469 nt12 507 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DN408_RS13400GCF_008042285#DN408_RS13400
RROmpRCurrent focus
10 469-11 143 nt · Forward (+)
DN408_RS13405GCF_008042285#DN408_RS13405
HKClassic
11 140-12 507 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000160975#BCERE0007_RS15520Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1529221
Simplified PFAM architecture for RROC_1529221
PFAM domain coverage: 183 / 224 aa (81.7%)
1 aa224 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-113] | Trans_reg_C[148-220]
- Domain count: 2
- Matched identifier: RROC_1529221
- Positioned domains: Response_reg 4-113 ; Response_reg 4-113 ; Trans_reg_C 148-220 ; Trans_reg_C 148-220
Cluster members and taxonomy
Representative gene: GCF_000160975#BCERE0007_RS15520
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 217 833 · GCF_008042285
AssemblyASM804228v1 · Scaffoldhaploid
Genome composition5 940 870 bp · 35,0% GCBacillus sp. AR13-1
Signal transduction countsGenes 137 · HK 73 · RR 64CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key