1 Response_reg#1
3-93 aa · 91 aa · 37.3% of protein
Raw token
Response_reg:3:0.00000323:93:91:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DN408_RS10900
Response regulator LytTR family
Bacillus sp. AR13-1 · GCF_008042285
ClassRRTypeLytTRLength244 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_008042285#DN408_RS10900Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length244 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage183 / 244 aa (75.0%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa244 aa
Domain-by-domain annotation2 items
2 LytTR#2
150-241 aa · 92 aa · 37.7% of protein
Raw token
LytTR:150:1.15e-20:241:97:98- Raw architecture: Response_reg:3:0.00000323:93:91:111#LytTR:150:1.15e-20:241:97:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_008042285::NZ_QNUA01000012.1::G00005
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span49984-50718Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDN408_11110RefSeq proteinWP_078179304.1
Context group ID
GCF_008042285::NZ_QNUA01000012.1::G00005Context members
DN408_RS10900
Partner locus tags
DN408_RS10900
Partner old locus tags
DN408_11110
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_078179304.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDN408_RS10900Primary locus identifier stored in the genes table.
Old locus tagDN408_11110Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QNUA01000012.1Sequence record reported by the local genomic context database.
Genomic interval49 984-50 718 nt735 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span49 984-50 718 ntGCF_008042285::NZ_QNUA01000012.1::G00005
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_008042285::NZ_QNUA01000012.1::G00005Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QNUA01000012.1All displayed genes belong to this local TCS context.
Neighborhood span49 984-50 718 nt735 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
49 984 nt50 718 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
DN408_RS10900GCF_008042285#DN408_RS10900
RRLytTRCurrent focus
49 984-50 718 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002014545#BW891_RS29370Use this link to inspect the representative gene detail.
PFAM architectureLytTR1 domain in the representative PFAM annotation.
PFAM architecture for RROC_0809154
Simplified PFAM architecture for RROC_0809154
PFAM domain coverage: 91 / 244 aa (37.3%)
1 aa244 aa
LytTR
- Simplified architecture: LytTR
- Raw architecture: LytTR[150-240]
- Domain count: 1
- Matched identifier: RROC_0809154
- Positioned domains: LytTR 150-240 ; LytTR 150-240
Cluster members and taxonomy
Representative gene: GCF_002014545#BW891_RS29370
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 217 833 · GCF_008042285
AssemblyASM804228v1 · Scaffoldhaploid
Genome composition5 940 870 bp · 35,0% GCBacillus sp. AR13-1
Signal transduction countsGenes 137 · HK 73 · RR 64CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key