1 HAMP#1
188-257 aa · 70 aa · 11.5% of protein
Raw token
HAMP:188:1.24e-16:257:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DN408_RS07080
Histidine kinase, Classic
Bacillus sp. AR13-1 · GCF_008042285
ClassHKTypeClassicLength611 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_008042285#DN408_RS07080Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HAMPPAS_9HisKAHATPase_c
Protein length611 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage347 / 611 aa (56.8%)Merged over positioned domains only.
Domain description1 HAMP,1 PAS_9,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa611 aa
Domain-by-domain annotation4 items
2 PAS_9#2
277-373 aa · 97 aa · 15.9% of protein
Raw token
PAS_9:277:0.00000000547:373:102:1023 HisKA#3
380-446 aa · 67 aa · 11.0% of protein
Raw token
HisKA:380:3.25e-18:446:67:644 HATPase_c#4
492-604 aa · 113 aa · 18.5% of protein
Raw token
HATPase_c:492:9.7e-36:604:113:109- Raw architecture: HAMP:188:1.24e-16:257:70:69#PAS_9:277:0.00000000547:373:102:102#HisKA:380:3.25e-18:446:67:64#HATPase_c:492:9.7e-36:604:113:109
- Domain description: 1 HAMP,1 PAS_9,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_008042285::NZ_QNUA01000007.1::G00080
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span537334-539880Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDN408_07240RefSeq proteinWP_002130184.1
Context group ID
GCF_008042285::NZ_QNUA01000007.1::G00080Context members
DN408_RS07080DN408_RS07085
Partner locus tags
DN408_RS07080DN408_RS07085
Partner old locus tags
DN408_07240DN408_07245
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_002130184.1Primary protein accession used for annex mappings.
UniProt accessionA0A0B5S8I0Primary UniProt accession resolved in the annex database.
UniProt IDA0A0B5S8I0_BACMYDisplay identifier provided by UniProt.
GO / PubMed7 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDN408_RS07080Primary locus identifier stored in the genes table.
Old locus tagDN408_07240Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QNUA01000007.1Sequence record reported by the local genomic context database.
Genomic interval537 334-539 169 nt1 836 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span537 334-539 880 ntGCF_008042285::NZ_QNUA01000007.1::G00080
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_008042285::NZ_QNUA01000007.1::G00080Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QNUA01000007.1All displayed genes belong to this local TCS context.
Neighborhood span537 334-539 880 nt2 547 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
537 334 nt539 880 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DN408_RS07080GCF_008042285#DN408_RS07080
HKClassicCurrent focus
537 334-539 169 nt · Reverse (-)
DN408_RS07085GCF_008042285#DN408_RS07085
RROmpR
539 173-539 880 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000003925#BMYCO0001_RS24695Use this link to inspect the representative gene detail.
PFAM architectureCache_WalK + HAMP + PAS + HisKA + HATPase_c5 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1000658
Simplified PFAM architecture for HKOC_1000658
PFAM domain coverage: 374 / 611 aa (61.2%)
1 aa611 aa
Cache_WalKHAMPPASHisKAHATPase_c
- Simplified architecture: Cache_WalK + HAMP + PAS + HisKA + HATPase_c
- Raw architecture: Cache_WalK[78-172] | HAMP[205-257] | PAS[269-317] | HisKA[381-446] | HATPase_c[493-603]
- Domain count: 5
- Matched identifier: HKOC_1000658
- Positioned domains: Cache_WalK 78-172 ; HAMP 205-257 ; PAS 269-317 ; HisKA 381-446 ; HATPase_c 493-603
Cluster members and taxonomy
Representative gene: GCF_000003925#BMYCO0001_RS24695
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 217 833 · GCF_008042285
AssemblyASM804228v1 · Scaffoldhaploid
Genome composition5 940 870 bp · 35,0% GCBacillus sp. AR13-1
Signal transduction countsGenes 137 · HK 73 · RR 64CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key