1 Response_reg#1
3-123 aa · 121 aa · 31.9% of protein
Raw token
Response_reg:3:4.11e-31:123:121:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DN408_RS03290
Response regulator, RsbU family
Bacillus sp. AR13-1 · GCF_008042285
ClassRRTypeRsbULength379 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_008042285#DN408_RS03290Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regSpoIIE
Protein length379 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage302 / 379 aa (79.7%)Merged over positioned domains only.
Domain description1 Response_reg,1 SpoIIESummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa379 aa
Domain-by-domain annotation2 items
2 SpoIIE#2
190-370 aa · 181 aa · 47.8% of protein
Raw token
SpoIIE:190:4.71e-40:370:187:190- Raw architecture: Response_reg:3:4.11e-31:123:121:111#SpoIIE:190:4.71e-40:370:187:190
- Domain description: 1 Response_reg,1 SpoIIE
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_008042285::NZ_QNUA01000006.1::G00064
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span103407-104546Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDN408_03365RefSeq proteinWP_147739953.1
Context group ID
GCF_008042285::NZ_QNUA01000006.1::G00064Context members
DN408_RS03290
Partner locus tags
DN408_RS03290
Partner old locus tags
DN408_03365
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_147739953.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDN408_RS03290Primary locus identifier stored in the genes table.
Old locus tagDN408_03365Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QNUA01000006.1Sequence record reported by the local genomic context database.
Genomic interval103 407-104 546 nt1 140 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span103 407-104 546 ntGCF_008042285::NZ_QNUA01000006.1::G00064
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_008042285::NZ_QNUA01000006.1::G00064Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QNUA01000006.1All displayed genes belong to this local TCS context.
Neighborhood span103 407-104 546 nt1 140 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
103 407 nt104 546 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
DN408_RS03290GCF_008042285#DN408_RS03290
RRRsbUCurrent focus
103 407-104 546 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_008042285#DN408_RS03290The current gene is the representative for this cluster.
PFAM architectureResponse_reg + SpoIIE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0425077
Simplified PFAM architecture for RROC_0425077
PFAM domain coverage: 302 / 379 aa (79.7%)
1 aa379 aa
Response_regSpoIIE
- Simplified architecture: Response_reg + SpoIIE
- Raw architecture: Response_reg[3-122] | SpoIIE[190-371]
- Domain count: 2
- Matched identifier: RROC_0425077
- Positioned domains: Response_reg 3-122 ; Response_reg 3-122 ; SpoIIE 190-371 ; SpoIIE 190-371
Cluster members and taxonomy
Representative gene: GCF_008042285#DN408_RS03290
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 217 833 · GCF_008042285
AssemblyASM804228v1 · Scaffoldhaploid
Genome composition5 940 870 bp · 35,0% GCBacillus sp. AR13-1
Signal transduction countsGenes 137 · HK 73 · RR 64CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key