1 GAF#1
23-163 aa · 141 aa · 21.1% of protein
Raw token
GAF:23:0.0000000000000074:163:143:133P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
FS501_RS03710
Histidine kinase, Classic
Bacillus mycoides · GCF_007673305
ClassHKTypeClassicLength669 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_007673305#FS501_RS03710Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
GAFPAS_9HisKAHATPase_c
Protein length669 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage390 / 669 aa (58.3%)Merged over positioned domains only.
Domain description1 GAF,1 PAS_9,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa669 aa
Domain-by-domain annotation4 items
2 PAS_9#2
344-438 aa · 95 aa · 14.2% of protein
Raw token
PAS_9:344:0.0000499:438:107:1023 HisKA#3
456-511 aa · 56 aa · 8.4% of protein
Raw token
HisKA:456:0.000000000000012:511:56:644 HATPase_c#4
565-662 aa · 98 aa · 14.6% of protein
Raw token
HATPase_c:565:8.11e-19:662:103:109- Raw architecture: GAF:23:0.0000000000000074:163:143:133#PAS_9:344:0.0000499:438:107:102#HisKA:456:0.000000000000012:511:56:64#HATPase_c:565:8.11e-19:662:103:109
- Domain description: 1 GAF,1 PAS_9,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_007673305::NZ_VDZL01000008.1::G00068
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span13978-15987Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_007673305::NZ_VDZL01000008.1::G00068Context members
FS501_RS03710
Partner locus tags
FS501_RS03710
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_144504567.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagFS501_RS03710Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_VDZL01000008.1Sequence record reported by the local genomic context database.
Genomic interval13 978-15 987 nt2 010 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span13 978-15 987 ntGCF_007673305::NZ_VDZL01000008.1::G00068
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_007673305::NZ_VDZL01000008.1::G00068Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_VDZL01000008.1All displayed genes belong to this local TCS context.
Neighborhood span13 978-15 987 nt2 010 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
13 978 nt15 987 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
FS501_RS03710GCF_007673305#FS501_RS03710
HKClassicCurrent focus
13 978-15 987 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_007673305#FS501_RS03710The current gene is the representative for this cluster.
PFAM architectureGAF + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0848848
Simplified PFAM architecture for HKOC_0848848
PFAM domain coverage: 299 / 669 aa (44.7%)
1 aa669 aa
GAFHisKAHATPase_c
- Simplified architecture: GAF + HisKA + HATPase_c
- Raw architecture: GAF[24-163] | HisKA[456-512] | HATPase_c[562-663]
- Domain count: 3
- Matched identifier: HKOC_0848848
- Positioned domains: GAF 24-163 ; HisKA 456-512 ; HATPase_c 562-663
Cluster members and taxonomy
Representative gene: GCF_007673305#FS501_RS03710
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 405 · GCF_007673305
AssemblyASM767330v1 · Scaffoldhaploid
Genome composition6 063 949 bp · 35,0% GCBacillus mycoides
Signal transduction countsGenes 112 · HK 58 · RR 54CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key