1 Response_reg#1
5-113 aa · 109 aa · 46.6% of protein
Raw token
Response_reg:5:7.22e-29:113:110:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
FLH71_RS02180
Response regulator OmpR family
Clostridioides difficile · GCF_007114945
ClassRRTypeOmpRLength234 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_007114945#FLH71_RS02180Stable P2CS identifier used across views.
GenomeGCF_007114945Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length234 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage187 / 234 aa (79.9%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 Trans_reg_C#2
148-225 aa · 78 aa · 33.3% of protein
Raw token
Trans_reg_C:148:1.54e-30:225:78:77- Raw architecture: Response_reg:5:7.22e-29:113:110:111#Trans_reg_C:148:1.54e-30:225:78:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_007114945::NZ_VINE01000001.1::G00005
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span448966-450901Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_007114945::NZ_VINE01000001.1::G00005Context members
FLH71_RS02180FLH71_RS02185
Partner locus tags
FLH71_RS02180FLH71_RS02185
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_021426276.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagFLH71_RS02180Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_VINE01000001.1Sequence record reported by the local genomic context database.
Genomic interval448 966-449 670 nt705 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span448 966-450 901 ntGCF_007114945::NZ_VINE01000001.1::G00005
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_007114945::NZ_VINE01000001.1::G00005Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_VINE01000001.1All displayed genes belong to this local TCS context.
Neighborhood span448 966-450 901 nt1 936 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
448 966 nt450 901 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
FLH71_RS02180GCF_007114945#FLH71_RS02180
RROmpRCurrent focus
448 966-449 670 nt · Forward (+)
FLH71_RS02185GCF_007114945#FLH71_RS02185
HKClassic
449 648-450 901 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000452005#QUI_RS11305Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1049071
Simplified PFAM architecture for RROC_1049071
PFAM domain coverage: 185 / 234 aa (79.1%)
1 aa234 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[5-113] | Trans_reg_C[149-224]
- Domain count: 2
- Matched identifier: RROC_1049071
- Positioned domains: Response_reg 5-113 ; Response_reg 5-113 ; Trans_reg_C 149-224 ; Trans_reg_C 149-224
Cluster members and taxonomy
Representative gene: GCF_000452005#QUI_RS11305
Displayed with 5 columns and 10 rows per page from the local display config.
Showing members 1 to 22 over 22 total members. Page 1 / 1.
GCF_000452005#QUI_RS11305 (representative) | ||||
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_007114945
AssemblyASM711494v1 · Contighaploid
Genome composition4 310 585 bp · 29,0% GCClostridioides difficile
Signal transduction countsGenes 106 · HK 51 · RR 55CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key