1 Response_reg#1
5-113 aa · 109 aa · 76.8% of protein
Raw token
Response_reg:5:1.48e-29:113:110:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
NMG01_RS19365
Response regulator, CheY family
Clostridioides difficile · GCF_024260055
ClassRRTypeCheYLength142 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_024260055#NMG01_RS19365Stable P2CS identifier used across views.
GenomeGCF_024260055Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length142 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage109 / 142 aa (76.8%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:5:1.48e-29:113:110:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_024260055::NZ_JANCKZ010000321.1::G00027
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span1-426Genomic interval covered by the local TCS group.
Identifiers
Old locus tagNMG01_19420RefSeq proteinWP_254466838.1
Context group ID
GCF_024260055::NZ_JANCKZ010000321.1::G00027Context members
NMG01_RS19365
Partner locus tags
NMG01_RS19365
Partner old locus tags
NMG01_19420
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_254466838.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagNMG01_RS19365Primary locus identifier stored in the genes table.
Old locus tagNMG01_19420Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JANCKZ010000321.1Sequence record reported by the local genomic context database.
Genomic interval1-426 nt426 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span1-426 ntGCF_024260055::NZ_JANCKZ010000321.1::G00027
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_024260055::NZ_JANCKZ010000321.1::G00027Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JANCKZ010000321.1All displayed genes belong to this local TCS context.
Neighborhood span1-426 nt426 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 nt426 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
NMG01_RS19365GCF_024260055#NMG01_RS19365
RRCheYCurrent focus
1-426 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000452005#QUI_RS11305Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1049071
Simplified PFAM architecture for RROC_1049071
PFAM domain coverage: 185 / 234 aa (79.1%)
1 aa234 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[5-113] | Trans_reg_C[149-224]
- Domain count: 2
- Matched identifier: RROC_1049071
- Positioned domains: Response_reg 5-113 ; Response_reg 5-113 ; Trans_reg_C 149-224 ; Trans_reg_C 149-224
Cluster members and taxonomy
Representative gene: GCF_000452005#QUI_RS11305
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_024260055
AssemblyASM2426005v1 · Contighaploid
Genome composition4 186 004 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 98 · HK 47 · RR 49CheA 1 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key