1 Response_reg#1
4-113 aa · 110 aa · 49.8% of protein
Raw token
Response_reg:4:4.92e-32:113:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
EWM09_RS01355
Response regulator OmpR family
Clostridioides difficile · GCF_007001725
ClassRRTypeOmpRLength221 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_007001725#EWM09_RS01355Stable P2CS identifier used across views.
GenomeGCF_007001725Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length221 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage183 / 221 aa (82.8%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa221 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
148-220 aa · 73 aa · 33.0% of protein
Raw token
Trans_reg_C:148:4.47e-26:220:74:77- Raw architecture: Response_reg:4:4.92e-32:113:111:111#Trans_reg_C:148:4.47e-26:220:74:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_007001725::NZ_SEQO01000001.1::G00018
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span318928-319593Genomic interval covered by the local TCS group.
Identifiers
Old locus tagEWM09_01355RefSeq proteinWP_004611595.1
Context group ID
GCF_007001725::NZ_SEQO01000001.1::G00018Context members
EWM09_RS01355
Partner locus tags
EWM09_RS01355
Partner old locus tags
EWM09_01355
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_004611595.1Primary protein accession used for annex mappings.
UniProt accessionA5Z504Primary UniProt accession resolved in the annex database.
UniProt IDA5Z504_9FIRMDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagEWM09_RS01355Primary locus identifier stored in the genes table.
Old locus tagEWM09_01355Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_SEQO01000001.1Sequence record reported by the local genomic context database.
Genomic interval318 928-319 593 nt666 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span318 928-319 593 ntGCF_007001725::NZ_SEQO01000001.1::G00018
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_007001725::NZ_SEQO01000001.1::G00018Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_SEQO01000001.1All displayed genes belong to this local TCS context.
Neighborhood span318 928-319 593 nt666 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
318 928 nt319 593 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
EWM09_RS01355GCF_007001725#EWM09_RS01355
RROmpRCurrent focus
318 928-319 593 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000153885#EUBVEN_RS05855Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1677870
Simplified PFAM architecture for RROC_1677870
PFAM domain coverage: 182 / 221 aa (82.4%)
1 aa221 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-113] | Trans_reg_C[148-219]
- Domain count: 2
- Matched identifier: RROC_1677870
- Positioned domains: Response_reg 4-113 ; Response_reg 4-113 ; Trans_reg_C 148-219 ; Trans_reg_C 148-219
Cluster members and taxonomy
Representative gene: GCF_000153885#EUBVEN_RS05855
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_007001725
AssemblyASM700172v1 · Contighaploid
Genome composition4 054 377 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 102 · HK 49 · RR 53CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key