1 Response_reg#1
7-117 aa · 111 aa · 47.4% of protein
Raw token
Response_reg:7:2.41e-34:117:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
D1N66_RS03835
Response regulator OmpR family
Clostridioides difficile · GCF_007001015
ClassRRTypeOmpRLength234 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_007001015#D1N66_RS03835Stable P2CS identifier used across views.
GenomeGCF_007001015Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length234 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage188 / 234 aa (80.3%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa234 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
155-231 aa · 77 aa · 32.9% of protein
Raw token
Trans_reg_C:155:5.71e-27:231:77:77- Raw architecture: Response_reg:7:2.41e-34:117:111:111#Trans_reg_C:155:5.71e-27:231:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_007001015::NZ_QWUU01000038.1::G00028
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span5928-8230Genomic interval covered by the local TCS group.
Identifiers
Old locus tagD1N66_03840RefSeq proteinWP_003439080.1
Context group ID
GCF_007001015::NZ_QWUU01000038.1::G00028Context members
D1N66_RS03835D1N66_RS03840
Partner locus tags
D1N66_RS03835D1N66_RS03840
Partner old locus tags
D1N66_03840D1N66_03845
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_003439080.1Primary protein accession used for annex mappings.
UniProt accessionA0A0H3N8K7Primary UniProt accession resolved in the annex database.
UniProt IDA0A0H3N8K7_CLODCDisplay identifier provided by UniProt.
GO / PubMed5 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagD1N66_RS03835Primary locus identifier stored in the genes table.
Old locus tagD1N66_03840Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QWUU01000038.1Sequence record reported by the local genomic context database.
Genomic interval5 928-6 632 nt705 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span5 928-8 230 ntGCF_007001015::NZ_QWUU01000038.1::G00028
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_007001015::NZ_QWUU01000038.1::G00028Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QWUU01000038.1All displayed genes belong to this local TCS context.
Neighborhood span5 928-8 230 nt2 303 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
5 928 nt8 230 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
D1N66_RS03835GCF_007001015#D1N66_RS03835
RROmpRCurrent focus
5 928-6 632 nt · Reverse (-)
D1N66_RS03840GCF_007001015#D1N66_RS03840
HKClassic
6 623-8 230 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000003215#QAC_RS0202675Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1047051
Simplified PFAM architecture for RROC_1047051
PFAM domain coverage: 188 / 234 aa (80.3%)
1 aa234 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[7-117] | Trans_reg_C[155-231]
- Domain count: 2
- Matched identifier: RROC_1047051
- Positioned domains: Response_reg 7-117 ; Response_reg 7-117 ; Trans_reg_C 155-231 ; Trans_reg_C 155-231
Cluster members and taxonomy
Representative gene: GCF_000003215#QAC_RS0202675
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_007001015
AssemblyASM700101v1 · Contighaploid
Genome composition4 029 419 bp · 29,0% GCClostridioides difficile
Signal transduction countsGenes 95 · HK 40 · RR 51CheA 1 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key