1 SBP_bac_3#1
57-277 aa · 221 aa · 33.3% of protein
Raw token
SBP_bac_3:57:1.87e-41:277:230:224P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
D1N74_RS17175
Histidine kinase, Classic
Clostridioides difficile · GCF_007000825
ClassHKTypeClassicLength663 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_007000825#D1N74_RS17175Stable P2CS identifier used across views.
GenomeGCF_007000825Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
SBP_bac_3HisKAHATPase_c
Protein length663 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage386 / 663 aa (58.2%)Merged over positioned domains only.
Domain description1 SBP_bac_3,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa663 aa
Domain-by-domain annotation3 items
2 HisKA#2
445-507 aa · 63 aa · 9.5% of protein
Raw token
HisKA:445:0.0000000000000411:507:63:643 HATPase_c#3
556-657 aa · 102 aa · 15.4% of protein
Raw token
HATPase_c:556:5.19e-23:657:104:109- Raw architecture: SBP_bac_3:57:1.87e-41:277:230:224#HisKA:445:0.0000000000000411:507:63:64#HATPase_c:556:5.19e-23:657:104:109
- Domain description: 1 SBP_bac_3,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_007000825::NZ_QWUM01000366.1::G00034
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span1-3315Genomic interval covered by the local TCS group.
Identifiers
Old locus tagD1N74_17185RefSeq proteinWP_142799837.1
Context group ID
GCF_007000825::NZ_QWUM01000366.1::G00034Context members
D1N74_RS17175D1N74_RS17180
Partner locus tags
D1N74_RS17175D1N74_RS17180
Partner old locus tags
D1N74_17185D1N74_17190
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_142799837.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagD1N74_RS17175Primary locus identifier stored in the genes table.
Old locus tagD1N74_17185Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QWUM01000366.1Sequence record reported by the local genomic context database.
Genomic interval1-1 993 nt1 993 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span1-3 315 ntGCF_007000825::NZ_QWUM01000366.1::G00034
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_007000825::NZ_QWUM01000366.1::G00034Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QWUM01000366.1All displayed genes belong to this local TCS context.
Neighborhood span1-3 315 nt3 315 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 nt3 315 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
D1N74_RS17175GCF_007000825#D1N74_RS17175
HKClassicCurrent focus
1-1 993 nt · Forward (+)
D1N74_RS17180GCF_007000825#D1N74_RS17180
RRNtrC
1 993-3 315 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_021284165#LWE77_RS13090Use this link to inspect the representative gene detail.
PFAM architectureSBP_bac_3 + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0829264
Simplified PFAM architecture for HKOC_0829264
PFAM domain coverage: 385 / 676 aa (57.0%)
1 aa676 aa
SBP_bac_3HisKAHATPase_c
- Simplified architecture: SBP_bac_3 + HisKA + HATPase_c
- Raw architecture: SBP_bac_3[72-289] | HisKA[460-521] | HATPase_c[567-671]
- Domain count: 3
- Matched identifier: HKOC_0829264
- Positioned domains: SBP_bac_3 72-289 ; HisKA 460-521 ; HATPase_c 567-671
Cluster members and taxonomy
Representative gene: GCF_021284165#LWE77_RS13090
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_007000825
AssemblyASM700082v1 · Contighaploid
Genome composition4 145 098 bp · 29,0% GCClostridioides difficile
Signal transduction countsGenes 100 · HK 47 · RR 52CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key