1 HisKA_3#1
242-304 aa · 63 aa · 7.2% of protein
Raw token
HisKA_3:242:3.05e-18:304:63:68P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
GH753_RS05810
Histidine kinase, Classic
Bifidobacterium pseudocatenulatum · GCF_006828885
ClassHKTypeClassicLength869 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_006828885#GH753_RS05810Stable P2CS identifier used across views.
GenomeGCF_006828885Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
HisKA_3HATPase_c
Protein length869 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage150 / 869 aa (17.3%)Merged over positioned domains only.
Domain description1 HisKA_3,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa869 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
353-439 aa · 87 aa · 10.0% of protein
Raw token
HATPase_c:353:0.00000000000025:439:104:109- Raw architecture: HisKA_3:242:3.05e-18:304:63:68#HATPase_c:353:0.00000000000025:439:104:109
- Domain description: 1 HisKA_3,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_006828885::NZ_BJLC01000001.1::G00010
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span1473944-1477376Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDN0207_11140%2CFNP71_RS05810RefSeq proteinWP_194150272.1
Context group ID
GCF_006828885::NZ_BJLC01000001.1::G00010Context members
GH753_RS05805GH753_RS05810
Partner locus tags
GH753_RS05805GH753_RS05810
Partner old locus tags
DN0207_11130%2CFNP71_RS05805DN0207_11140%2CFNP71_RS05810
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_194150272.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagGH753_RS05810Primary locus identifier stored in the genes table.
Old locus tagDN0207_11140%2CFNP71_RS05810Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_BJLC01000001.1Sequence record reported by the local genomic context database.
Genomic interval1 474 767-1 477 376 nt2 610 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span1 473 944-1 477 376 ntGCF_006828885::NZ_BJLC01000001.1::G00010
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_006828885::NZ_BJLC01000001.1::G00010Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_BJLC01000001.1All displayed genes belong to this local TCS context.
Neighborhood span1 473 944-1 477 376 nt3 433 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 473 944 nt1 477 376 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
GH753_RS05805GCF_006828885#GH753_RS05805
RRNarL
1 473 944-1 474 690 nt · Reverse (-)
GH753_RS05810GCF_006828885#GH753_RS05810
HKClassicCurrent focus
1 474 767-1 477 376 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_006828885#GH753_RS05810The current gene is the representative for this cluster.
PFAM architectureDUF7134 + HisKA_3 + HATPase_c + DUF71344 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0459927
Simplified PFAM architecture for HKOC_0459927
PFAM domain coverage: 422 / 869 aa (48.6%)
1 aa869 aa
DUF7134HisKA_3HATPase_cDUF7134
- Simplified architecture: DUF7134 + HisKA_3 + HATPase_c + DUF7134
- Raw architecture: DUF7134[10-148] | HisKA_3[242-304] | HATPase_c[353-440] | DUF7134[554-685]
- Domain count: 4
- Matched identifier: HKOC_0459927
- Positioned domains: DUF7134 10-148 ; HisKA_3 242-304 ; HATPase_c 353-440 ; DUF7134 554-685
Cluster members and taxonomy
Representative gene: GCF_006828885#GH753_RS05810
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 28 026 · GCF_006828885
AssemblyASM682888v1 · Contighaploid
Genome composition2 277 780 bp · 56,5% GCBifidobacterium pseudocatenulatum
Signal transduction countsGenes 26 · HK 11 · RR 14CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key