1 GAF#1
244-363 aa · 120 aa · 20.4% of protein
Raw token
GAF:244:0.00000137:363:128:133P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
FKY81_RS08405
Histidine kinase, Classic
Enterococcus faecalis · GCF_006541705
ClassHKTypeClassicLength589 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_006541705#FKY81_RS08405Stable P2CS identifier used across views.
GenomeGCF_006541705Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Enterococcaceae; Enterococcus
Domain signature
Compact overview inferred from the domain field
GAFHis_kinaseHATPase_c
Protein length589 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage304 / 589 aa (51.6%)Merged over positioned domains only.
Domain description1 GAF,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa589 aa
Domain-by-domain annotation3 items
2 His_kinase#2
378-456 aa · 79 aa · 13.4% of protein
Raw token
His_kinase:378:3.98e-30:456:80:803 HATPase_c#3
476-580 aa · 105 aa · 17.8% of protein
Raw token
HATPase_c:476:0.0000000000148:580:109:109- Raw architecture: GAF:244:0.00000137:363:128:133#His_kinase:378:3.98e-30:456:80:80#HATPase_c:476:0.0000000000148:580:109:109
- Domain description: 1 GAF,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_006541705::NZ_VHRF01000016.1::G00005
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span21901-24379Genomic interval covered by the local TCS group.
Identifiers
Old locus tagFKY81_08405RefSeq proteinWP_104854390.1
Context group ID
GCF_006541705::NZ_VHRF01000016.1::G00005Context members
FKY81_RS08405FKY81_RS08410
Partner locus tags
FKY81_RS08405FKY81_RS08410
Partner old locus tags
FKY81_08405FKY81_08410
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_104854390.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagFKY81_RS08405Primary locus identifier stored in the genes table.
Old locus tagFKY81_08405Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_VHRF01000016.1Sequence record reported by the local genomic context database.
Genomic interval21 901-23 670 nt1 770 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span21 901-24 379 ntGCF_006541705::NZ_VHRF01000016.1::G00005
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_006541705::NZ_VHRF01000016.1::G00005Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_VHRF01000016.1All displayed genes belong to this local TCS context.
Neighborhood span21 901-24 379 nt2 479 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
21 901 nt24 379 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
FKY81_RS08405GCF_006541705#FKY81_RS08405
HKClassicCurrent focus
21 901-23 670 nt · Forward (+)
FKY81_RS08410GCF_006541705#FKY81_RS08410
RRLytTR
23 651-24 379 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002946755#CUS33_RS05555Use this link to inspect the representative gene detail.
PFAM architecture5TM-5TMR_LYT + His_kinase + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1115962
Simplified PFAM architecture for HKOC_1115962
PFAM domain coverage: 363 / 589 aa (61.6%)
1 aa589 aa
5TM-5TMR_LYTHis_kinaseHATPase_c
- Simplified architecture: 5TM-5TMR_LYT + His_kinase + HATPase_c
- Raw architecture: 5TM-5TMR_LYT[26-206] | His_kinase[378-456] | HATPase_c[476-578]
- Domain count: 3
- Matched identifier: HKOC_1115962
- Positioned domains: 5TM-5TMR_LYT 26-206 ; His_kinase 378-456 ; HATPase_c 476-578
Cluster members and taxonomy
Representative gene: GCF_002946755#CUS33_RS05555
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 351 · GCF_006541705
AssemblyASM654170v1 · Contighaploid
Genome composition2 647 103 bp · 37,5% GCEnterococcus faecalis
Signal transduction countsGenes 26 · HK 12 · RR 14CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderLactobacillalesFamilyEnterococcaceaeGenusEnterococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Lactobacillales6Enterococcaceae7Enterococcus
Related genes
Preview from the same derived genome key