1 Response_reg#1
3-112 aa · 110 aa · 50.2% of protein
Raw token
Response_reg:3:5.9e-24:112:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DA402_RS18925
Response regulator OmpR family
Clostridioides difficile · GCF_006408285
ClassRRTypeOmpRLength219 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_006408285#DA402_RS18925Stable P2CS identifier used across views.
GenomeGCF_006408285Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length219 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage185 / 219 aa (84.5%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 Trans_reg_C#2
145-219 aa · 75 aa · 34.2% of protein
Raw token
Trans_reg_C:145:9.98e-21:219:76:77- Raw architecture: Response_reg:3:5.9e-24:112:111:111#Trans_reg_C:145:9.98e-21:219:76:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_006408285::NZ_PZOO01000001.1::G00050
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span4044678-4045337Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDA402_18920RefSeq proteinWP_009264385.1
Context group ID
GCF_006408285::NZ_PZOO01000001.1::G00050Context members
DA402_RS18925
Partner locus tags
DA402_RS18925
Partner old locus tags
DA402_18920
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_009264385.1Primary protein accession used for annex mappings.
UniProt accessionA0A411ZJ63Primary UniProt accession resolved in the annex database.
UniProt IDA0A411ZJ63_9FIRMDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDA402_RS18925Primary locus identifier stored in the genes table.
Old locus tagDA402_18920Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_PZOO01000001.1Sequence record reported by the local genomic context database.
Genomic interval4 044 678-4 045 337 nt660 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span4 044 678-4 045 337 ntGCF_006408285::NZ_PZOO01000001.1::G00050
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_006408285::NZ_PZOO01000001.1::G00050Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_PZOO01000001.1All displayed genes belong to this local TCS context.
Neighborhood span4 044 678-4 045 337 nt660 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
4 044 678 nt4 045 337 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
DA402_RS18925GCF_006408285#DA402_RS18925
RROmpRCurrent focus
4 044 678-4 045 337 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000235905#HMPREF9945_RS11860Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1768032
Simplified PFAM architecture for RROC_1768032
PFAM domain coverage: 184 / 219 aa (84.0%)
1 aa219 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[3-111] | Trans_reg_C[145-219]
- Domain count: 2
- Matched identifier: RROC_1768032
- Positioned domains: Response_reg 3-111 ; Response_reg 3-111 ; Trans_reg_C 145-219 ; Trans_reg_C 145-219
Cluster members and taxonomy
Representative gene: GCF_000235905#HMPREF9945_RS11860
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_006408285
AssemblyASM640828v1 · Contighaploid
Genome composition4 221 541 bp · 29,0% GCClostridioides difficile
Signal transduction countsGenes 102 · HK 49 · RR 53CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key