1 SBP_bac_3#1
57-274 aa · 218 aa · 23.1% of protein
Raw token
SBP_bac_3:57:6.46e-28:274:235:224P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
EYS05_RS01830
Histidine kinase, Hybrid
Blautia sp. SC05B48 · GCF_005848555
ClassHKTypeHybridLength943 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_005848555#EYS05_RS01830Stable P2CS identifier used across views.
GenomeGCF_005848555Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
SBP_bac_3PBPbHisKAHATPase_cResponse_reg
Protein length943 aaLength used to scale native and Biotite-like views.
Annotated domains55 with usable coordinates.
Domain coverage719 / 943 aa (76.2%)Merged over positioned domains only.
Domain description1 SBP_bac_3,1 PBPb,1 HisKA,1 HATPase_c,1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa943 aa
Domain-by-domain annotation5 items
2 PBPb#2
295-493 aa · 199 aa · 21.1% of protein
Raw token
PBPb:295:1.32e-20:493:208:2193 HisKA#3
567-632 aa · 66 aa · 7.0% of protein
Raw token
HisKA:567:1.06e-16:632:66:644 HATPase_c#4
679-797 aa · 119 aa · 12.6% of protein
Raw token
HATPase_c:679:8.23e-31:797:120:1095 Response_reg#5
821-937 aa · 117 aa · 12.4% of protein
Raw token
Response_reg:821:1e-31:937:117:111- Raw architecture: SBP_bac_3:57:6.46e-28:274:235:224#PBPb:295:1.32e-20:493:208:219#HisKA:567:1.06e-16:632:66:64#HATPase_c:679:8.23e-31:797:120:109#Response_reg:821:1e-31:937:117:111
- Domain description: 1 SBP_bac_3,1 PBPb,1 HisKA,1 HATPase_c,1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_005848555::NZ_CP040518.1::G00006
Group size22 locus tags listed below.
HK / RR2 / 0Counts resolved for the local TCS neighborhood.
Context span413301-418821Genomic interval covered by the local TCS group.
Identifiers
Old locus tagEYS05_01830RefSeq proteinWP_138276451.1
Context group ID
GCF_005848555::NZ_CP040518.1::G00006Context members
EYS05_RS01830EYS05_RS01835
Partner locus tags
EYS05_RS01830EYS05_RS01835
Partner old locus tags
EYS05_01830EYS05_01835
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_138276451.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagEYS05_RS01830Primary locus identifier stored in the genes table.
Old locus tagEYS05_01830Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP040518.1Sequence record reported by the local genomic context database.
Genomic interval413 301-416 132 nt2 832 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span413 301-418 821 ntGCF_005848555::NZ_CP040518.1::G00006
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_005848555::NZ_CP040518.1::G00006Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP040518.1All displayed genes belong to this local TCS context.
Neighborhood span413 301-418 821 nt5 521 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
413 301 nt418 821 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
EYS05_RS01830GCF_005848555#EYS05_RS01830
HKHybridCurrent focus
413 301-416 132 nt · Reverse (-)
EYS05_RS01835GCF_005848555#EYS05_RS01835
HKHybrid
416 236-418 821 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_005848555#EYS05_RS01830The current gene is the representative for this cluster.
PFAM architectureSBP_bac_3 + HisKA + HATPase_c + Response_reg4 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0337216
Simplified PFAM architecture for HKOC_0337216
PFAM domain coverage: 486 / 943 aa (51.5%)
1 aa943 aa
SBP_bac_3HisKAHATPase_cResponse_reg
- Simplified architecture: SBP_bac_3 + HisKA + HATPase_c + Response_reg
- Raw architecture: SBP_bac_3[75-261] | HisKA[567-632] | HATPase_c[680-795] | Response_reg[821-937]
- Domain count: 4
- Matched identifier: HKOC_0337216
- Positioned domains: SBP_bac_3 75-261 ; HisKA 567-632 ; HATPase_c 680-795 ; Response_reg 821-937
Cluster members and taxonomy
Representative gene: GCF_005848555#EYS05_RS01830
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 479 767 · GCF_005848555
AssemblyASM584855v1 · Complete Genomehaploid
Genome composition3 731 576 bp · 44,0% GCBlautia sp. SC05B48
Signal transduction countsGenes 94 · HK 47 · RR 45CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key