1 HAMP#1
289-358 aa · 70 aa · 11.6% of protein
Raw token
HAMP:289:0.000000312:358:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
FGQ84_RS04635
Histidine kinase, Classic
Roseburia hominis · GCF_005845255
ClassHKTypeClassicLength606 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_005845255#FGQ84_RS04635Stable P2CS identifier used across views.
GenomeGCF_005845255Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Roseburia
Domain signature
Compact overview inferred from the domain field
HAMPHis_kinaseHATPase_c
Protein length606 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage263 / 606 aa (43.4%)Merged over positioned domains only.
Domain description1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa606 aa
Domain-by-domain annotation3 items
2 His_kinase#2
373-449 aa · 77 aa · 12.7% of protein
Raw token
His_kinase:373:4.04e-28:449:77:803 HATPase_c#3
463-578 aa · 116 aa · 19.1% of protein
Raw token
HATPase_c:463:5.05e-17:578:116:109- Raw architecture: HAMP:289:0.000000312:358:70:69#His_kinase:373:4.04e-28:449:77:80#HATPase_c:463:5.05e-17:578:116:109
- Domain description: 1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_005845255::NZ_SPHF01000007.1::G00058
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span7766-10568Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_005845255::NZ_SPHF01000007.1::G00058Context members
FGQ84_RS04635FGQ84_RS04640
Partner locus tags
FGQ84_RS04635FGQ84_RS04640
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_138345524.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagFGQ84_RS04635Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_SPHF01000007.1Sequence record reported by the local genomic context database.
Genomic interval7 766-9 586 nt1 821 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span7 766-10 568 ntGCF_005845255::NZ_SPHF01000007.1::G00058
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_005845255::NZ_SPHF01000007.1::G00058Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_SPHF01000007.1All displayed genes belong to this local TCS context.
Neighborhood span7 766-10 568 nt2 803 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
7 766 nt10 568 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
FGQ84_RS04635GCF_005845255#FGQ84_RS04635
HKClassicCurrent focus
7 766-9 586 nt · Forward (+)
FGQ84_RS04640GCF_005845255#FGQ84_RS04640
RRunclassified
9 564-10 568 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_005845255#FGQ84_RS04635The current gene is the representative for this cluster.
PFAM architectureHis_kinase + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1024809
Simplified PFAM architecture for HKOC_1024809
PFAM domain coverage: 192 / 606 aa (31.7%)
1 aa606 aa
His_kinaseHATPase_c
- Simplified architecture: His_kinase + HATPase_c
- Raw architecture: His_kinase[373-449] | HATPase_c[463-577]
- Domain count: 2
- Matched identifier: HKOC_1024809
- Positioned domains: His_kinase 373-449 ; HATPase_c 463-577
Cluster members and taxonomy
Representative gene: GCF_005845255#FGQ84_RS04635
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 301 301 · GCF_005845255
AssemblyASM584525v1 · Scaffoldhaploid
Genome composition3 630 746 bp · 43,0% GCRoseburia hominis
Signal transduction countsGenes 109 · HK 47 · RR 60CheA 1 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusRoseburia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Roseburia
Related genes
Preview from the same derived genome key