1 Response_reg#1
4-110 aa · 107 aa · 48.6% of protein
Raw token
Response_reg:4:5.11e-29:110:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
FGQ84_RS02060
Response regulator OmpR family
Roseburia hominis · GCF_005845255
ClassRRTypeOmpRLength220 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_005845255#FGQ84_RS02060Stable P2CS identifier used across views.
GenomeGCF_005845255Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Roseburia
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length220 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage183 / 220 aa (83.2%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa220 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
142-217 aa · 76 aa · 34.5% of protein
Raw token
Trans_reg_C:142:2.17e-22:217:77:77- Raw architecture: Response_reg:4:5.11e-29:110:111:111#Trans_reg_C:142:2.17e-22:217:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_005845255::NZ_SPHF01000003.1::G00036
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span71127-71789Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_005845255::NZ_SPHF01000003.1::G00036Context members
FGQ84_RS02060
Partner locus tags
FGQ84_RS02060
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_138345013.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagFGQ84_RS02060Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_SPHF01000003.1Sequence record reported by the local genomic context database.
Genomic interval71 127-71 789 nt663 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span71 127-71 789 ntGCF_005845255::NZ_SPHF01000003.1::G00036
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_005845255::NZ_SPHF01000003.1::G00036Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_SPHF01000003.1All displayed genes belong to this local TCS context.
Neighborhood span71 127-71 789 nt663 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
71 127 nt71 789 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
FGQ84_RS02060GCF_005845255#FGQ84_RS02060
RROmpRCurrent focus
71 127-71 789 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_005845255#FGQ84_RS02060The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1734639
Simplified PFAM architecture for RROC_1734639
PFAM domain coverage: 182 / 220 aa (82.7%)
1 aa220 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-110] | Trans_reg_C[143-217]
- Domain count: 2
- Matched identifier: RROC_1734639
- Positioned domains: Response_reg 4-110 ; Response_reg 4-110 ; Trans_reg_C 143-217 ; Trans_reg_C 143-217
Cluster members and taxonomy
Representative gene: GCF_005845255#FGQ84_RS02060
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 301 301 · GCF_005845255
AssemblyASM584525v1 · Scaffoldhaploid
Genome composition3 630 746 bp · 43,0% GCRoseburia hominis
Signal transduction countsGenes 109 · HK 47 · RR 60CheA 1 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusRoseburia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Roseburia
Related genes
Preview from the same derived genome key