1 HisKA#1
255-320 aa · 66 aa · 13.7% of protein
Raw token
HisKA:255:0.000000000000656:320:66:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
FGQ84_RS01295
Histidine kinase, Classic
Roseburia hominis · GCF_005845255
ClassHKTypeClassicLength483 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_005845255#FGQ84_RS01295Stable P2CS identifier used across views.
GenomeGCF_005845255Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Roseburia
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length483 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage178 / 483 aa (36.9%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 HATPase_c#2
368-479 aa · 112 aa · 23.2% of protein
Raw token
HATPase_c:368:4.8e-28:479:112:109- Raw architecture: HisKA:255:0.000000000000656:320:66:64#HATPase_c:368:4.8e-28:479:112:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_005845255::NZ_SPHF01000002.1::G00026
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span88512-90680Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_005845255::NZ_SPHF01000002.1::G00026Context members
FGQ84_RS01295FGQ84_RS01300
Partner locus tags
FGQ84_RS01295FGQ84_RS01300
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_022046415.1Primary protein accession used for annex mappings.
UniProt accessionA0A0M6WV57Primary UniProt accession resolved in the annex database.
UniProt IDA0A0M6WV57_9FIRMDisplay identifier provided by UniProt.
GO / PubMed4 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagFGQ84_RS01295Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_SPHF01000002.1Sequence record reported by the local genomic context database.
Genomic interval88 512-89 963 nt1 452 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span88 512-90 680 ntGCF_005845255::NZ_SPHF01000002.1::G00026
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_005845255::NZ_SPHF01000002.1::G00026Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_SPHF01000002.1All displayed genes belong to this local TCS context.
Neighborhood span88 512-90 680 nt2 169 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
88 512 nt90 680 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
FGQ84_RS01295GCF_005845255#FGQ84_RS01295
HKClassicCurrent focus
88 512-89 963 nt · Reverse (-)
FGQ84_RS01300GCF_005845255#FGQ84_RS01300
RROmpR
89 988-90 680 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001406815#M72_RS12815Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1594884
Simplified PFAM architecture for HKOC_1594884
PFAM domain coverage: 178 / 483 aa (36.9%)
1 aa483 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[255-320] | HATPase_c[368-479]
- Domain count: 2
- Matched identifier: HKOC_1594884
- Positioned domains: HisKA 255-320 ; HATPase_c 368-479
Cluster members and taxonomy
Representative gene: GCF_001406815#M72_RS12815
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 301 301 · GCF_005845255
AssemblyASM584525v1 · Scaffoldhaploid
Genome composition3 630 746 bp · 43,0% GCRoseburia hominis
Signal transduction countsGenes 109 · HK 47 · RR 60CheA 1 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusRoseburia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Roseburia
Related genes
Preview from the same derived genome key