1 Response_reg#1
4-113 aa · 110 aa · 48.0% of protein
Raw token
Response_reg:4:6.1e-34:113:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
FGQ84_RS00325
Response regulator OmpR family
Roseburia hominis · GCF_005845255
ClassRRTypeOmpRLength229 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_005845255#FGQ84_RS00325Stable P2CS identifier used across views.
GenomeGCF_005845255Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Roseburia
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length229 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage187 / 229 aa (81.7%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 Trans_reg_C#2
151-227 aa · 77 aa · 33.6% of protein
Raw token
Trans_reg_C:151:2.31e-31:227:77:77- Raw architecture: Response_reg:4:6.1e-34:113:111:111#Trans_reg_C:151:2.31e-31:227:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_005845255::NZ_SPHF01000001.1::G00014
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span75961-78133Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_005845255::NZ_SPHF01000001.1::G00014Context members
FGQ84_RS00325FGQ84_RS00330
Partner locus tags
FGQ84_RS00325FGQ84_RS00330
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_022045823.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagFGQ84_RS00325Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_SPHF01000001.1Sequence record reported by the local genomic context database.
Genomic interval75 961-76 650 nt690 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span75 961-78 133 ntGCF_005845255::NZ_SPHF01000001.1::G00014
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_005845255::NZ_SPHF01000001.1::G00014Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_SPHF01000001.1All displayed genes belong to this local TCS context.
Neighborhood span75 961-78 133 nt2 173 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
75 961 nt78 133 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
FGQ84_RS00325GCF_005845255#FGQ84_RS00325
RROmpRCurrent focus
75 961-76 650 nt · Reverse (-)
FGQ84_RS00330GCF_005845255#FGQ84_RS00330
HKClassic
76 628-78 133 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003462365#DXD06_RS14720Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1261073
Simplified PFAM architecture for RROC_1261073
PFAM domain coverage: 187 / 229 aa (81.7%)
1 aa229 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-113] | Trans_reg_C[151-227]
- Domain count: 2
- Matched identifier: RROC_1261073
- Positioned domains: Response_reg 4-113 ; Response_reg 4-113 ; Trans_reg_C 151-227 ; Trans_reg_C 151-227
Cluster members and taxonomy
Representative gene: GCF_003462365#DXD06_RS14720
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 301 301 · GCF_005845255
AssemblyASM584525v1 · Scaffoldhaploid
Genome composition3 630 746 bp · 43,0% GCRoseburia hominis
Signal transduction countsGenes 109 · HK 47 · RR 60CheA 1 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusRoseburia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Roseburia
Related genes
Preview from the same derived genome key