1 Response_reg#1
11-95 aa · 85 aa · 60.3% of protein
Raw token
Response_reg:11:4.73e-18:95:85:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
FGQ70_RS00780
Response regulator, CheY family
Bifidobacterium adolescentis · GCF_005845205
ClassRRTypeCheYLength141 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_005845205#FGQ70_RS00780Stable P2CS identifier used across views.
GenomeGCF_005845205Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length141 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage85 / 141 aa (60.3%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa141 aa
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:11:4.73e-18:95:85:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_005845205::NZ_SPGC01000001.1::G00007
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span181715-182140Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_005845205::NZ_SPGC01000001.1::G00007Context members
FGQ70_RS00780
Partner locus tags
FGQ70_RS00780
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_138296748.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagFGQ70_RS00780Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_SPGC01000001.1Sequence record reported by the local genomic context database.
Genomic interval181 715-182 140 nt426 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span181 715-182 140 ntGCF_005845205::NZ_SPGC01000001.1::G00007
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_005845205::NZ_SPGC01000001.1::G00007Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_SPGC01000001.1All displayed genes belong to this local TCS context.
Neighborhood span181 715-182 140 nt426 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
181 715 nt182 140 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
FGQ70_RS00780GCF_005845205#FGQ70_RS00780
RRCheYCurrent focus
181 715-182 140 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_005845205#FGQ70_RS00780The current gene is the representative for this cluster.
PFAM architectureResponse_reg1 domain in the representative PFAM annotation.
PFAM architecture for RROC_2263458
Simplified PFAM architecture for RROC_2263458
PFAM domain coverage: 90 / 141 aa (63.8%)
1 aa141 aa
Response_reg
- Simplified architecture: Response_reg
- Raw architecture: Response_reg[11-100]
- Domain count: 1
- Matched identifier: RROC_2263458
- Positioned domains: Response_reg 11-100 ; Response_reg 11-100
Cluster members and taxonomy
Representative gene: GCF_005845205#FGQ70_RS00780
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 680 · GCF_005845205
AssemblyASM584520v1 · Scaffoldhaploid
Genome composition2 251 529 bp · 59,5% GCBifidobacterium adolescentis
Signal transduction countsGenes 25 · HK 11 · RR 13CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key