1 Response_reg#1
3-112 aa · 110 aa · 46.2% of protein
Raw token
Response_reg:3:2.22e-16:112:112:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
FGQ78_RS00430
Response regulator LytTR family
Dorea longicatena · GCF_005844655
ClassRRTypeLytTRLength238 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_005844655#FGQ78_RS00430Stable P2CS identifier used across views.
GenomeGCF_005844655Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Dorea
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length238 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage202 / 238 aa (84.9%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa238 aa
Domain-by-domain annotation2 items
2 LytTR#2
139-230 aa · 92 aa · 38.7% of protein
Raw token
LytTR:139:0.0000000000000989:230:97:98- Raw architecture: Response_reg:3:2.22e-16:112:112:111#LytTR:139:0.0000000000000989:230:97:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_005844655::NZ_SPHT01000001.1::G00018
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span77427-78143Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_005844655::NZ_SPHT01000001.1::G00018Context members
FGQ78_RS00430
Partner locus tags
FGQ78_RS00430
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_138375477.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagFGQ78_RS00430Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_SPHT01000001.1Sequence record reported by the local genomic context database.
Genomic interval77 427-78 143 nt717 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span77 427-78 143 ntGCF_005844655::NZ_SPHT01000001.1::G00018
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_005844655::NZ_SPHT01000001.1::G00018Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_SPHT01000001.1All displayed genes belong to this local TCS context.
Neighborhood span77 427-78 143 nt717 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
77 427 nt78 143 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
FGQ78_RS00430GCF_005844655#FGQ78_RS00430
RRLytTRCurrent focus
77 427-78 143 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_005844655#FGQ78_RS00430The current gene is the representative for this cluster.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0942073
Simplified PFAM architecture for RROC_0942073
PFAM domain coverage: 202 / 238 aa (84.9%)
1 aa238 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[3-114] | LytTR[139-228]
- Domain count: 2
- Matched identifier: RROC_0942073
- Positioned domains: Response_reg 3-114 ; Response_reg 3-114 ; LytTR 139-228 ; LytTR 139-228
Cluster members and taxonomy
Representative gene: GCF_005844655#FGQ78_RS00430
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 88 431 · GCF_005844655
AssemblyASM584465v1 · Scaffoldhaploid
Genome composition3 335 700 bp · 41,0% GCDorea longicatena
Signal transduction countsGenes 78 · HK 36 · RR 42CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusDorea
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Dorea
Related genes
Preview from the same derived genome key