1 HAMP#1
51-129 aa · 79 aa · 22.1% of protein
Raw token
HAMP:51:0.00000000722:129:79:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
FC701_RS05820
Histidine kinase, Classic
Bacillus mycoides · GCF_005217805
ClassHKTypeClassicLength357 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_005217805#FC701_RS05820Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length357 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage255 / 357 aa (71.4%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa357 aa
Domain-by-domain annotation3 items
2 HisKA#2
134-199 aa · 66 aa · 18.5% of protein
Raw token
HisKA:134:0.0000000000000862:199:66:643 HATPase_c#3
243-352 aa · 110 aa · 30.8% of protein
Raw token
HATPase_c:243:8.77e-32:352:110:109- Raw architecture: HAMP:51:0.00000000722:129:79:69#HisKA:134:0.0000000000000862:199:66:64#HATPase_c:243:8.77e-32:352:110:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_005217805::NZ_SZOD01000125.1::G00014
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span2816-4563Genomic interval covered by the local TCS group.
Identifiers
Old locus tagFC701_05820RefSeq proteinWP_137057159.1
Context group ID
GCF_005217805::NZ_SZOD01000125.1::G00014Context members
FC701_RS05820FC701_RS05825
Partner locus tags
FC701_RS05820FC701_RS05825
Partner old locus tags
FC701_05820FC701_05825
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_137057159.1Primary protein accession used for annex mappings.
UniProt accessionA0A4U3AF72Primary UniProt accession resolved in the annex database.
UniProt IDA0A4U3AF72_BACMYDisplay identifier provided by UniProt.
GO / PubMed3 / 1Unique GO terms and literature references available below.
Reference hubs
GO terms
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagFC701_RS05820Primary locus identifier stored in the genes table.
Old locus tagFC701_05820Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_SZOD01000125.1Sequence record reported by the local genomic context database.
Genomic interval2 816-3 889 nt1 074 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span2 816-4 563 ntGCF_005217805::NZ_SZOD01000125.1::G00014
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_005217805::NZ_SZOD01000125.1::G00014Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_SZOD01000125.1All displayed genes belong to this local TCS context.
Neighborhood span2 816-4 563 nt1 748 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
2 816 nt4 563 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
FC701_RS05820GCF_005217805#FC701_RS05820
HKClassicCurrent focus
2 816-3 889 nt · Reverse (-)
FC701_RS05825GCF_005217805#FC701_RS05825
RROmpR
3 886-4 563 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_005217805#FC701_RS05820The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2766740
Simplified PFAM architecture for HKOC_2766740
PFAM domain coverage: 175 / 357 aa (49.0%)
1 aa357 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[134-198] | HATPase_c[244-353]
- Domain count: 2
- Matched identifier: HKOC_2766740
- Positioned domains: HisKA 134-198 ; HATPase_c 244-353
Cluster members and taxonomy
Representative gene: GCF_005217805#FC701_RS05820
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 405 · GCF_005217805
AssemblyASM521780v1 · Scaffoldhaploid
Genome composition6 602 848 bp · 35,0% GCBacillus mycoides
Signal transduction countsGenes 119 · HK 61 · RR 56CheA 1 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key