1 Response_reg#1
1-110 aa · 110 aa · 55.0% of protein
Raw token
Response_reg:1:1.37e-19:110:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
E6L38_RS12280
Response regulator NarL family
Bifidobacterium longum subsp. infantis · GCF_004803425
ClassRRTypeNarLLength200 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_004803425#E6L38_RS12280Stable P2CS identifier used across views.
GenomeGCF_004803425Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length200 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage162 / 200 aa (81.0%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa200 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
141-192 aa · 52 aa · 26.0% of protein
Raw token
HTH_LUXR:141:0.0000000000000667:192:52:58- Raw architecture: Response_reg:1:1.37e-19:110:111:111#HTH_LUXR:141:0.0000000000000667:192:52:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_004803425::NZ_SSWL01000028.1::G00008
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span3342-3944Genomic interval covered by the local TCS group.
Identifiers
Old locus tagE6L38_12290RefSeq proteinWP_136501158.1
Context group ID
GCF_004803425::NZ_SSWL01000028.1::G00008Context members
E6L38_RS12280
Partner locus tags
E6L38_RS12280
Partner old locus tags
E6L38_12290
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_136501158.1Primary protein accession used for annex mappings.
UniProt accessionA0A4S5B2F4Primary UniProt accession resolved in the annex database.
UniProt IDA0A4S5B2F4_BIFLIDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagE6L38_RS12280Primary locus identifier stored in the genes table.
Old locus tagE6L38_12290Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_SSWL01000028.1Sequence record reported by the local genomic context database.
Genomic interval3 342-3 944 nt603 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span3 342-3 944 ntGCF_004803425::NZ_SSWL01000028.1::G00008
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_004803425::NZ_SSWL01000028.1::G00008Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_SSWL01000028.1All displayed genes belong to this local TCS context.
Neighborhood span3 342-3 944 nt603 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
3 342 nt3 944 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
E6L38_RS12280GCF_004803425#E6L38_RS12280
RRNarLCurrent focus
3 342-3 944 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_004803425#E6L38_RS12280The current gene is the representative for this cluster.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_2137345
Simplified PFAM architecture for RROC_2137345
PFAM domain coverage: 160 / 200 aa (80.0%)
1 aa200 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[2-108] | GerE[141-193]
- Domain count: 2
- Matched identifier: RROC_2137345
- Positioned domains: Response_reg 2-108 ; Response_reg 2-108 ; GerE 141-193 ; GerE 141-193
Cluster members and taxonomy
Representative gene: GCF_004803425#E6L38_RS12280
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 682 · GCF_004803425
AssemblyASM480342v1 · Contighaploid
Genome composition2 731 642 bp · 59,5% GCBifidobacterium longum subsp. infantis
Signal transduction countsGenes 43 · HK 14 · RR 24CheA 0 · PP 5
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key