1 Response_reg#1
4-111 aa · 108 aa · 48.9% of protein
Raw token
Response_reg:4:1.55e-31:111:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
E6L38_RS11900
Response regulator OmpR family
Bifidobacterium longum subsp. infantis · GCF_004803425
ClassRRTypeOmpRLength221 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_004803425#E6L38_RS11900Stable P2CS identifier used across views.
GenomeGCF_004803425Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length221 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage181 / 221 aa (81.9%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa221 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
146-218 aa · 73 aa · 33.0% of protein
Raw token
Trans_reg_C:146:5.18e-23:218:75:77- Raw architecture: Response_reg:4:1.55e-31:111:111:111#Trans_reg_C:146:5.18e-23:218:75:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_004803425::NZ_SSWL01000022.1::G00007
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span17228-19242Genomic interval covered by the local TCS group.
Identifiers
Old locus tagE6L38_11910RefSeq proteinWP_136501126.1
Context group ID
GCF_004803425::NZ_SSWL01000022.1::G00007Context members
E6L38_RS11895E6L38_RS11900
Partner locus tags
E6L38_RS11895E6L38_RS11900
Partner old locus tags
E6L38_11905E6L38_11910
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_136501126.1Primary protein accession used for annex mappings.
UniProt accessionA0A4S5B3C6Primary UniProt accession resolved in the annex database.
UniProt IDA0A4S5B3C6_BIFLIDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagE6L38_RS11900Primary locus identifier stored in the genes table.
Old locus tagE6L38_11910Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_SSWL01000022.1Sequence record reported by the local genomic context database.
Genomic interval18 577-19 242 nt666 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span17 228-19 242 ntGCF_004803425::NZ_SSWL01000022.1::G00007
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_004803425::NZ_SSWL01000022.1::G00007Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_SSWL01000022.1All displayed genes belong to this local TCS context.
Neighborhood span17 228-19 242 nt2 015 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
17 228 nt19 242 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
E6L38_RS11895GCF_004803425#E6L38_RS11895
HKClassic
17 228-18 517 nt · Reverse (-)
E6L38_RS11900GCF_004803425#E6L38_RS11900
RROmpRCurrent focus
18 577-19 242 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_004803425#E6L38_RS11900The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1689608
Simplified PFAM architecture for RROC_1689608
PFAM domain coverage: 180 / 221 aa (81.4%)
1 aa221 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-111] | Trans_reg_C[146-217]
- Domain count: 2
- Matched identifier: RROC_1689608
- Positioned domains: Response_reg 4-111 ; Response_reg 4-111 ; Trans_reg_C 146-217 ; Trans_reg_C 146-217
Cluster members and taxonomy
Representative gene: GCF_004803425#E6L38_RS11900
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 682 · GCF_004803425
AssemblyASM480342v1 · Contighaploid
Genome composition2 731 642 bp · 59,5% GCBifidobacterium longum subsp. infantis
Signal transduction countsGenes 43 · HK 14 · RR 24CheA 0 · PP 5
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key