1 HisKA#1
123-188 aa · 66 aa · 19.1% of protein
Raw token
HisKA:123:0.00000000346:188:66:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
E6L38_RS04920
Histidine kinase, Classic
Bifidobacterium longum subsp. infantis · GCF_004803425
ClassHKTypeClassicLength345 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_004803425#E6L38_RS04920Stable P2CS identifier used across views.
GenomeGCF_004803425Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length345 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage170 / 345 aa (49.3%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa345 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
234-337 aa · 104 aa · 30.1% of protein
Raw token
HATPase_c:234:3.2e-29:337:104:109- Raw architecture: HisKA:123:0.00000000346:188:66:64#HATPase_c:234:3.2e-29:337:104:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_004803425::NZ_SSWL01000006.1::G00023
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span103281-105013Genomic interval covered by the local TCS group.
Identifiers
Old locus tagE6L38_04925RefSeq proteinWP_136500444.1
Context group ID
GCF_004803425::NZ_SSWL01000006.1::G00023Context members
E6L38_RS04915E6L38_RS04920
Partner locus tags
E6L38_RS04915E6L38_RS04920
Partner old locus tags
E6L38_04920E6L38_04925
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_136500444.1Primary protein accession used for annex mappings.
UniProt accessionA0A4S5BCB9Primary UniProt accession resolved in the annex database.
UniProt IDA0A4S5BCB9_BIFLIDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagE6L38_RS04920Primary locus identifier stored in the genes table.
Old locus tagE6L38_04925Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_SSWL01000006.1Sequence record reported by the local genomic context database.
Genomic interval103 976-105 013 nt1 038 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span103 281-105 013 ntGCF_004803425::NZ_SSWL01000006.1::G00023
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_004803425::NZ_SSWL01000006.1::G00023Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_SSWL01000006.1All displayed genes belong to this local TCS context.
Neighborhood span103 281-105 013 nt1 733 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
103 281 nt105 013 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
E6L38_RS04915GCF_004803425#E6L38_RS04915
RROmpR
103 281-103 967 nt · Forward (+)
E6L38_RS04920GCF_004803425#E6L38_RS04920
HKClassicCurrent focus
103 976-105 013 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_004803425#E6L38_RS04920The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2820126
Simplified PFAM architecture for HKOC_2820126
PFAM domain coverage: 170 / 345 aa (49.3%)
1 aa345 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[125-188] | HATPase_c[234-339]
- Domain count: 2
- Matched identifier: HKOC_2820126
- Positioned domains: HisKA 125-188 ; HATPase_c 234-339
Cluster members and taxonomy
Representative gene: GCF_004803425#E6L38_RS04920
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 682 · GCF_004803425
AssemblyASM480342v1 · Contighaploid
Genome composition2 731 642 bp · 59,5% GCBifidobacterium longum subsp. infantis
Signal transduction countsGenes 43 · HK 14 · RR 24CheA 0 · PP 5
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key