1 HisKA_3#1
171-230 aa · 60 aa · 15.3% of protein
Raw token
HisKA_3:171:0.00000000000645:230:62:68P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
E6L38_RS04495
Histidine kinase, Classic
Bifidobacterium longum subsp. infantis · GCF_004803425
ClassHKTypeClassicLength392 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_004803425#E6L38_RS04495Stable P2CS identifier used across views.
GenomeGCF_004803425Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
HisKA_3HATPase_c
Protein length392 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage144 / 392 aa (36.7%)Merged over positioned domains only.
Domain description1 HisKA_3,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa392 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
274-357 aa · 84 aa · 21.4% of protein
Raw token
HATPase_c:274:0.000000532:357:99:109- Raw architecture: HisKA_3:171:0.00000000000645:230:62:68#HATPase_c:274:0.000000532:357:99:109
- Domain description: 1 HisKA_3,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_004803425::NZ_SSWL01000006.1::G00018
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span18954-20821Genomic interval covered by the local TCS group.
Identifiers
Old locus tagE6L38_04500RefSeq proteinWP_136500413.1
Context group ID
GCF_004803425::NZ_SSWL01000006.1::G00018Context members
E6L38_RS04490E6L38_RS04495
Partner locus tags
E6L38_RS04490E6L38_RS04495
Partner old locus tags
E6L38_04495E6L38_04500
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_136500413.1Primary protein accession used for annex mappings.
UniProt accessionA0A4S5BC00Primary UniProt accession resolved in the annex database.
UniProt IDA0A4S5BC00_BIFLIDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagE6L38_RS04495Primary locus identifier stored in the genes table.
Old locus tagE6L38_04500Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_SSWL01000006.1Sequence record reported by the local genomic context database.
Genomic interval19 643-20 821 nt1 179 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span18 954-20 821 ntGCF_004803425::NZ_SSWL01000006.1::G00018
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_004803425::NZ_SSWL01000006.1::G00018Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_SSWL01000006.1All displayed genes belong to this local TCS context.
Neighborhood span18 954-20 821 nt1 868 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
18 954 nt20 821 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
E6L38_RS04490GCF_004803425#E6L38_RS04490
RRNarL
18 954-19 649 nt · Reverse (-)
E6L38_RS04495GCF_004803425#E6L38_RS04495
HKClassicCurrent focus
19 643-20 821 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_004803425#E6L38_RS04495The current gene is the representative for this cluster.
PFAM architectureHisKA_31 domain in the representative PFAM annotation.
PFAM architecture for HKOC_2513172
Simplified PFAM architecture for HKOC_2513172
PFAM domain coverage: 60 / 392 aa (15.3%)
1 aa392 aa
HisKA_3
- Simplified architecture: HisKA_3
- Raw architecture: HisKA_3[171-230]
- Domain count: 1
- Matched identifier: HKOC_2513172
- Positioned domains: HisKA_3 171-230
Cluster members and taxonomy
Representative gene: GCF_004803425#E6L38_RS04495
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 682 · GCF_004803425
AssemblyASM480342v1 · Contighaploid
Genome composition2 731 642 bp · 59,5% GCBifidobacterium longum subsp. infantis
Signal transduction countsGenes 43 · HK 14 · RR 24CheA 0 · PP 5
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key