1 Response_reg#1
4-116 aa · 113 aa · 47.9% of protein
Raw token
Response_reg:4:5.82e-16:116:116:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
E5F45_RS00025
Response regulator LytTR family
Clostridioides difficile · GCF_004684395
ClassRRTypeLytTRLength236 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_004684395#E5F45_RS00025Stable P2CS identifier used across views.
GenomeGCF_004684395Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length236 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage202 / 236 aa (85.6%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa236 aa
Domain-by-domain annotation2 items
2 LytTR#2
139-227 aa · 89 aa · 37.7% of protein
Raw token
LytTR:139:1.4e-21:227:95:98- Raw architecture: Response_reg:4:5.82e-16:116:116:111#LytTR:139:1.4e-21:227:95:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_004684395::NZ_SRJU01000002.1::G00029
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span2121-2831Genomic interval covered by the local TCS group.
Identifiers
Old locus tagE5F45_00025RefSeq proteinWP_135324992.1
Context group ID
GCF_004684395::NZ_SRJU01000002.1::G00029Context members
E5F45_RS00025
Partner locus tags
E5F45_RS00025
Partner old locus tags
E5F45_00025
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_135324992.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagE5F45_RS00025Primary locus identifier stored in the genes table.
Old locus tagE5F45_00025Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_SRJU01000002.1Sequence record reported by the local genomic context database.
Genomic interval2 121-2 831 nt711 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span2 121-2 831 ntGCF_004684395::NZ_SRJU01000002.1::G00029
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_004684395::NZ_SRJU01000002.1::G00029Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_SRJU01000002.1All displayed genes belong to this local TCS context.
Neighborhood span2 121-2 831 nt711 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
2 121 nt2 831 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
E5F45_RS00025GCF_004684395#E5F45_RS00025
RRLytTRCurrent focus
2 121-2 831 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_004684395#E5F45_RS00025The current gene is the representative for this cluster.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0996914
Simplified PFAM architecture for RROC_0996914
PFAM domain coverage: 201 / 236 aa (85.2%)
1 aa236 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[4-116] | LytTR[140-227]
- Domain count: 2
- Matched identifier: RROC_0996914
- Positioned domains: Response_reg 4-116 ; Response_reg 4-116 ; LytTR 140-227 ; LytTR 140-227
Cluster members and taxonomy
Representative gene: GCF_004684395#E5F45_RS00025
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_004684395
AssemblyASM468439v1 · Contighaploid
Genome composition4 239 303 bp · 28,0% GCClostridioides difficile
Signal transduction countsGenes 101 · HK 47 · RR 54CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key