1 HAMP#1
288-356 aa · 69 aa · 11.6% of protein
Raw token
HAMP:288:0.000000000000194:356:69:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
EC910_RS22330
Histidine kinase, Classic
Bacillus thuringiensis · GCF_004343085
ClassHKTypeClassicLength594 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_004343085#EC910_RS22330Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length594 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage242 / 594 aa (40.7%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa594 aa
Domain-by-domain annotation3 items
2 HisKA#2
375-439 aa · 65 aa · 10.9% of protein
Raw token
HisKA:375:0.000000000000814:439:65:643 HATPase_c#3
483-590 aa · 108 aa · 18.2% of protein
Raw token
HATPase_c:483:1.05e-21:590:109:109- Raw architecture: HAMP:288:0.000000000000194:356:69:69#HisKA:375:0.000000000000814:439:65:64#HATPase_c:483:1.05e-21:590:109:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_004343085::NZ_SMDG01000017.1::G00049
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span133496-135972Genomic interval covered by the local TCS group.
Identifiers
Old locus tagEC910_117133RefSeq proteinWP_131934425.1
Context group ID
GCF_004343085::NZ_SMDG01000017.1::G00049Context members
EC910_RS22330EC910_RS22335
Partner locus tags
EC910_RS22330EC910_RS22335
Partner old locus tags
EC910_117133EC910_117134
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_131934425.1Primary protein accession used for annex mappings.
UniProt accessionA0A4R4B9E9Primary UniProt accession resolved in the annex database.
UniProt IDA0A4R4B9E9_BACTUDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagEC910_RS22330Primary locus identifier stored in the genes table.
Old locus tagEC910_117133Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_SMDG01000017.1Sequence record reported by the local genomic context database.
Genomic interval133 496-135 280 nt1 785 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span133 496-135 972 ntGCF_004343085::NZ_SMDG01000017.1::G00049
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_004343085::NZ_SMDG01000017.1::G00049Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_SMDG01000017.1All displayed genes belong to this local TCS context.
Neighborhood span133 496-135 972 nt2 477 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
133 496 nt135 972 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
EC910_RS22330GCF_004343085#EC910_RS22330
HKClassicCurrent focus
133 496-135 280 nt · Reverse (-)
EC910_RS22335GCF_004343085#EC910_RS22335
RROmpR
135 277-135 972 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_004343085#EC910_RS22330The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1088789
Simplified PFAM architecture for HKOC_1088789
PFAM domain coverage: 223 / 594 aa (37.5%)
1 aa594 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[306-355] | HisKA[375-439] | HATPase_c[484-591]
- Domain count: 3
- Matched identifier: HKOC_1088789
- Positioned domains: HAMP 306-355 ; HisKA 375-439 ; HATPase_c 484-591
Cluster members and taxonomy
Representative gene: GCF_004343085#EC910_RS22330
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 428 · GCF_004343085
AssemblyASM434308v1 · Scaffoldhaploid
Genome composition6 102 587 bp · 35,0% GCBacillus thuringiensis
Signal transduction countsGenes 108 · HK 59 · RR 49CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key